chr3 : 116,905,932 116,906,458
526 bp 46 TFs 0 linked genes
This 526 bp open chromatin element has no linked target genes and is bound by 46 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:116,900,932 – 116,911,458
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
46 transcription factors
Source
Cell type
ASCL1 2 datasets
Motif DE_48h DE_48h-ASCL1_MA1100.3 8 bp overlap
Motif DE_48h DE_48h-ASCL1_MA1631.2 9 bp overlap
Ascl2 1 dataset
Motif DE_48h DE_48h-Ascl2_MA0816.1 10 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_neural-crest-cell GSE108506.CHD7.hiPSC_derived_neural-crest-cell 217 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 255 bp overlap
DAXX 1 dataset
ChIP PC-3_DAXX GSE68647.DAXX.PC-3_DAXX 210 bp overlap
DPF2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-T910M 194 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 306 bp overlap
ESR1 1 dataset
ChIP MDA-MB-231_LQ_45min GSE95121.ESR1.MDA-MB-231_LQ_45min 118 bp overlap
FIGLA 1 dataset
Motif DE_48h DE_48h-FIGLA_MA0820.2 6 bp overlap
FOS 1 dataset
ChIP MCF-10A ENCSR000DON.FOS.MCF-10A 168 bp overlap
FOSL1 1 dataset
ChIP MDA-MB-231 GSE95303.FOSL1.MDA-MB-231 121 bp overlap
FOXA1 1 dataset
ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 236 bp overlap
FOXA2 3 datasets
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 315 bp overlap
ChIP DE DE-FOXA2-1 526 bp overlap
ChIP DE DE-FOXA2-2 336 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 324 bp overlap
ChIP DE DE-GATA4-2 287 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 336 bp overlap
ChIP DE DE-GATA6-1 104 bp overlap
ChIP DE DE-GATA6-2 304 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 208 bp overlap
GRHL2 1 dataset
ChIP HBE GSE46194.GRHL2.HBE 145 bp overlap
HIF1A 1 dataset
ChIP PC-3_siOC2 GSE106305.HIF1A.PC-3_siOC2 225 bp overlap
MAML1 1 dataset
ChIP SCC_4h GSE156486.MAML1.SCC_4h 269 bp overlap
MYOD1 1 dataset
Motif DE_48h DE_48h-MYOD1_MA0499.3 9 bp overlap
NFKB1 1 dataset
ChIP MCF10A-Er-Src_TAM GSE115597.NFKB1.MCF10A-Er-Src_TAM 98 bp overlap
NHLH1 1 dataset
Motif DE_48h DE_48h-NHLH1_MA0048.3 9 bp overlap
NKX2-1 1 dataset
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 398 bp overlap
NUTM1 1 dataset
ChIP NUT_DMSO GSE133122.NUTM1.NUT_DMSO 286 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 147 bp overlap
RBPJ 1 dataset
ChIP SCC_4h GSE156486.RBPJ.SCC_4h 244 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 352 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 414 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 386 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 312 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 406 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 328 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 275 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 429 bp overlap
SMAD3 3 datasets
ChIP NCI-H441 GSE51509.SMAD3.NCI-H441 401 bp overlap
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 342 bp overlap
ChIP PC-3_hypoxia GSE106305.SMAD3.PC-3_hypoxia 150 bp overlap
SMARCC1 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 109 bp overlap
SNAI1 1 dataset
Motif DE_48h DE_48h-SNAI1_MA1558.2 7 bp overlap
SNAI2 1 dataset
Motif DE_48h DE_48h-SNAI2_MA0745.3 8 bp overlap
SNAI3 1 dataset
Motif DE_48h DE_48h-SNAI3_MA1559.2 9 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 348 bp overlap
SS18 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 167 bp overlap
STAT3 5 datasets
ChIP HCC70 GSE152203.STAT3.HCC70 174 bp overlap
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 356 bp overlap
ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 111 bp overlap
ChIP MCF10A-Er-Src_TAM GSE115597.STAT3.MCF10A-Er-Src_TAM 111 bp overlap
ChIP NCI-H358 GSE79707.STAT3.NCI-H358 443 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 234 bp overlap
TCF12 1 dataset
Motif DE_48h DE_48h-TCF12_MA1648.2 7 bp overlap
TCF3 1 dataset
Motif DE_48h DE_48h-TCF3_MA0522.4 7 bp overlap
TCF4 1 dataset
Motif DE_48h DE_48h-TCF4_MA0830.3 8 bp overlap
ZEB1 1 dataset
Motif DE_48h DE_48h-ZEB1_MA0103.4 6 bp overlap
ZNF213 1 dataset
Motif DE_48h DE_48h-ZNF213_MA2121.1 12 bp overlap
ZNF324 1 dataset
Motif DE_48h DE_48h-ZNF324_MA1977.2 14 bp overlap
ZNF528 1 dataset
Motif DE_48h DE_48h-ZNF528_MA1597.1 17 bp overlap
Zfp809 1 dataset
Motif DE_48h DE_48h-Zfp809_MA2125.1 9 bp overlap