chr1 : 62,406,434 62,407,043
609 bp 32 TFs 0 linked genes
This 609 bp open chromatin element has no linked target genes and is bound by 32 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:62,401,434 – 62,412,043
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
32 transcription factors
Source
Cell type
BRD4 3 datasets
ChIP NCI-H2171_DMSO GSE49224.BRD4.NCI-H2171_DMSO 176 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 290 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 403 bp overlap
BRF1 1 dataset
ChIP H9 GSE94418.BRF1.H9 92 bp overlap
CTCF 6 datasets
ChIP CD14 ENCSR000ATN.CTCF.CD14 166 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 443 bp overlap
ChIP HT-1080 GSE135580.CTCF.HT-1080 546 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 145 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 132 bp overlap
ChIP neuron GSE115407.CTCF.neuron 135 bp overlap
EBF1 1 dataset
ChIP ASC GSE54889.EBF1.ASC 131 bp overlap
FOXA1 1 dataset
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 264 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 449 bp overlap
ChIP DE DE-FOXA2-2 519 bp overlap
GABPA 1 dataset
ChIP VCaP GSE49091.GABPA.VCaP 134 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 609 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 402 bp overlap
ChIP DE DE-GATA6-2 506 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 393 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 259 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 470 bp overlap
HDAC2 2 datasets
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 235 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 242 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 306 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 387 bp overlap
MYOD1 3 datasets
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 265 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 190 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 177 bp overlap
NIPBL 1 dataset
ChIP GP5D GSE51234.NIPBL.GP5D 287 bp overlap
PARP1 1 dataset
ChIP MCF-10A GSE93038.PARP1.MCF-10A 95 bp overlap
POU5F1 1 dataset
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 257 bp overlap
RAD21 6 datasets
ChIP HCT-116 GSE131606.RAD21.HCT-116 184 bp overlap
ChIP HEK293_siCtrl GSE130135.RAD21.HEK293_siCtrl 162 bp overlap
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 303 bp overlap
ChIP HEK293_siE1A-TAZ GSE130135.RAD21.HEK293_siE1A-TAZ 201 bp overlap
ChIP HeLa-Tet-On GSE112028.RAD21.HeLa-Tet-On 254 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 350 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 237 bp overlap
SMAD2 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 199 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 420 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 406 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 322 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 342 bp overlap
SMC1 1 dataset
ChIP DKO GSE131606.SMC1.DKO 364 bp overlap
SMC3 4 datasets
ChIP HeLa GSE126990.SMC3.HeLa 148 bp overlap
ChIP HeLa-Kyoto GSE102884.SMC3.HeLa-Kyoto 148 bp overlap
ChIP HeLa-Kyoto GSE138405.SMC3.HeLa-Kyoto 148 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.SMC3.HeLa-Kyoto_PDS5-depleted 197 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 220 bp overlap
SOX8 1 dataset
ChIP RH4 GSE116344.SOX8.RH4 213 bp overlap
TFAP2A 1 dataset
ChIP WA09 GSE105081.TFAP2A.WA09 238 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 315 bp overlap
TFAP2C 5 datasets
ChIP HCC1954 GSE126897.TFAP2C.HCC1954 201 bp overlap
ChIP MCF-7_E2 GSE23852.TFAP2C.MCF-7_E2 199 bp overlap
ChIP MCF-7_ETOH GSE23852.TFAP2C.MCF-7_ETOH 218 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 609 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 562 bp overlap
YY1 1 dataset
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 181 bp overlap
ZNF143 1 dataset
ChIP FLP143HA_T0 GSE39263.ZNF143.FLP143HA_T0 173 bp overlap
ZNF528 1 dataset
ChIP HEK293 GSE76494.ZNF528.HEK293 233 bp overlap