chr3 : 88,217,045 88,218,637
1,592 bp 49 TFs 0 linked genes
This 1.6 kb open chromatin element has no linked target genes and is bound by 49 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:88,212,045 – 88,223,637
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
49 transcription factors
Source
Cell type
ATF4 1 dataset
Motif DE_36h DE_36h-ATF4_MA0833.3 10 bp overlap
BARX1 1 dataset
Motif DE_36h DE_36h-BARX1_MA0875.2 6 bp overlap
BSX 1 dataset
Motif DE_36h DE_36h-BSX_MA0876.2 6 bp overlap
CEBPG 1 dataset
Motif DE_36h DE_36h-CEBPG_MA1636.2 10 bp overlap
CTCF 2 datasets
ChIP hESC_D7 GSE116862.CTCF.hESC_D7 121 bp overlap
ChIP hESC_D7 GSE116862.CTCF.hESC_D7 67 bp overlap
DLX1 1 dataset
Motif DE_36h DE_36h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_36h DE_36h-DLX6_MA0882.2 6 bp overlap
DUX4 1 dataset
Motif DE_36h DE_36h-DUX4_MA0468.1 11 bp overlap
DUXA 1 dataset
Motif DE_36h DE_36h-DUXA_MA0884.2 13 bp overlap
Dlx3 1 dataset
Motif DE_36h DE_36h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_36h DE_36h-Dlx4_MA0881.2 6 bp overlap
Dux 1 dataset
Motif DE_36h DE_36h-Dux_MA0611.3 11 bp overlap
EOMES 4 datasets
ChIP hESC GSE26097.EOMES.hESC 230 bp overlap
ChIP hESC GSE26097.EOMES.hESC 152 bp overlap
ChIP hESC GSE26097.EOMES.hESC 135 bp overlap
ChIP hESC GSE26097.EOMES.hESC 200 bp overlap
FOS 1 dataset
Motif DE_36h DE_36h-FOS_MA0476.2 8 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 280 bp overlap
ChIP DE DE-FOXA2-1 378 bp overlap
GATA2 1 dataset
ChIP TF1 GSE73207.GATA2.TF1 212 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 1429 bp overlap
ChIP DE DE-GATA4-2 1476 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 1457 bp overlap
ChIP DE DE-GATA6-2 1462 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 1350 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 592 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 1508 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 999 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 821 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 889 bp overlap
GBX2 1 dataset
Motif DE_36h DE_36h-GBX2_MA0890.2 6 bp overlap
HESX1 1 dataset
Motif DE_36h DE_36h-HESX1_MA0894.2 6 bp overlap
HOXA7 1 dataset
Motif DE_36h DE_36h-HOXA7_MA1498.3 6 bp overlap
Jun 1 dataset
Motif DE_36h DE_36h-Jun_MA0489.3 8 bp overlap
KLF5 1 dataset
Motif DE_36h DE_36h-KLF5_MA0599.1 10 bp overlap
LBX2 1 dataset
Motif DE_36h DE_36h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_36h DE_36h-LHX2_MA0700.3 6 bp overlap
MSX1 1 dataset
Motif DE_36h DE_36h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_36h DE_36h-MSX2_MA0708.3 6 bp overlap
Msx3 1 dataset
Motif DE_36h DE_36h-Msx3_MA0709.2 6 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 224 bp overlap
Nobox 1 dataset
Motif DE_36h DE_36h-Nobox_MA0125.2 6 bp overlap
PBX2 1 dataset
ChIP K-562 ENCSR263DFP.PBX2.K-562 218 bp overlap
PHOX2A 1 dataset
Motif DE_36h DE_36h-PHOX2A_MA0713.1 11 bp overlap
PROP1 1 dataset
Motif DE_36h DE_36h-PROP1_MA0715.1 11 bp overlap
Pax7 1 dataset
Motif DE_36h DE_36h-Pax7_MA0680.3 10 bp overlap
RAX 1 dataset
Motif DE_36h DE_36h-RAX_MA0718.2 6 bp overlap
SMARCA4 2 datasets
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 871 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 236 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 267 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 410 bp overlap
SP5 1 dataset
Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap
TAL1 1 dataset
ChIP CHRF28811 ERP008568.TAL1.CHRF28811 216 bp overlap
ZFP14 1 dataset
Motif DE_36h DE_36h-ZFP14_MA1972.1 15 bp overlap
ZIC1 1 dataset
Motif DE_36h DE_36h-ZIC1_MA0696.1 14 bp overlap
ZIC4 1 dataset
Motif DE_36h DE_36h-ZIC4_MA0751.2 14 bp overlap
ZIC5 1 dataset
Motif DE_36h DE_36h-ZIC5_MA1584.2 15 bp overlap
ZNF740 1 dataset
Motif DE_36h DE_36h-ZNF740_MA0753.3 10 bp overlap