chr3 : 41,695,888 – 41,696,279
391 bp 27 TFs 0 linked genes
This 391 bp open chromatin element has no linked target genes and is bound by 27 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:41,690,888 – 41,701,279
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
27 transcription factors
Source
Cell type
ARID2 1 dataset
ChIP K562 ENCFF099BVK 320 bp overlap
CBX1 1 dataset
ChIP K562 ENCFF008KGK 391 bp overlap
CBX3 2 datasets
ChIP HCT116 ENCFF947BOL 391 bp overlap
ChIP K562 ENCFF410AQU 165 bp overlap
CBX5 1 dataset
ChIP K562 ENCFF188CYP 317 bp overlap
CTCF 192 datasets
ChIP 22Rv1 ENCFF466OXN 391 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 125 bp overlap
ChIP A549 ENCFF034FVO 271 bp overlap
ChIP A549 ENCFF182TCQ 209 bp overlap
ChIP A549 ENCFF434LUY 210 bp overlap
ChIP A549 ENCFF669BWC 358 bp overlap
ChIP A673 ENCFF123WOM 309 bp overlap
ChIP AG04449 ENCFF248MBD 181 bp overlap
ChIP AG04450 ENCFF116DJL 251 bp overlap
ChIP AG09309 ENCFF478XPS 241 bp overlap
ChIP AG09319 ENCFF401ZTN 233 bp overlap
ChIP AG10803 ENCFF549AQK 222 bp overlap
ChIP BJ ENCFF434HEC 263 bp overlap
ChIP C4-2B ENCFF821XVN 275 bp overlap
ChIP C4-2B ENCFF821XVN 218 bp overlap
ChIP Caco-2 ENCFF753NZV 357 bp overlap
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap
ChIP DND-41 ENCFF913MRA 263 bp overlap
ChIP DOHH2 ENCFF637WNW 225 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 109 bp overlap
ChIP GM06990 ENCFF471OQT 247 bp overlap
ChIP GM12864 ENCFF357DQE 222 bp overlap
ChIP GM12872 ENCFF697BYI 237 bp overlap
ChIP GM12873 ENCFF711LOS 248 bp overlap
ChIP GM12874 ENCFF942MTD 239 bp overlap
ChIP GM12878 ENCFF485TGR 226 bp overlap
ChIP GM13977 ENCFF528ESQ 171 bp overlap
ChIP GM23338 ENCFF531QOI 241 bp overlap
ChIP GM23338 ENCFF772DML 189 bp overlap
ChIP GM23338 ENCFF832KWE 391 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF414GZI 217 bp overlap
ChIP H1 ENCFF764RHO 139 bp overlap
ChIP H54 ENCFF255TVO 98 bp overlap
ChIP H9 ENCFF152GTF 318 bp overlap
ChIP HCT116 ENCFF003KHP 210 bp overlap
ChIP HCT116 ENCFF209YMI 247 bp overlap
ChIP HEK293 ENCFF498RMM 228 bp overlap
ChIP HFF-Myc ENCFF680WYR 289 bp overlap
ChIP HFFc6 ENCFF005CJI 391 bp overlap
ChIP HeLa-S3 ENCFF255ASZ 144 bp overlap
ChIP HeLa-S3 ENCFF565UFR 161 bp overlap
ChIP HeLa-S3 ENCFF626XQK 224 bp overlap
ChIP HepG2 ENCFF127KUP 231 bp overlap
ChIP HepG2 ENCFF348BUL 172 bp overlap
ChIP HepG2 ENCFF757EKU 300 bp overlap
ChIP IMR-90 ENCFF887MRH 72 bp overlap
ChIP K-562 ENCSR000AKO.CTCF.K-562 234 bp overlap
ChIP K-562 ENCSR000DMA.CTCF.K-562 123 bp overlap
ChIP K-562 ENCSR000BPJ.CTCF.K-562 161 bp overlap
ChIP K-562 GSE70764.CTCF.K-562 143 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 294 bp overlap
ChIP K-562_RabbitC GSE137216.CTCF.K-562_RabbitC 343 bp overlap
ChIP K562 ENCFF082GOI 100 bp overlap
ChIP K562 ENCFF111MGE 146 bp overlap
ChIP K562 ENCFF400DFR 107 bp overlap
ChIP K562 ENCFF430KTH 247 bp overlap
ChIP K562 ENCFF598YSU 78 bp overlap
ChIP KMS-11 ENCFF853JKX 391 bp overlap
ChIP KMS-11 ENCFF853JKX 305 bp overlap
ChIP LNCAP ENCFF223HIG 333 bp overlap
ChIP LNCAP ENCFF700QXT 159 bp overlap
ChIP Loucy ENCFF359TVQ 136 bp overlap
ChIP MCF 10A ENCFF988BGF 292 bp overlap
ChIP MCF-7 ENCFF139NQI 257 bp overlap
ChIP MCF-7 ENCFF414SZG 191 bp overlap
ChIP MCF-7 ENCFF494VXA 219 bp overlap
ChIP MCF-7 ENCFF844STM 191 bp overlap
ChIP MCF-7 ENCFF954TUV 205 bp overlap
ChIP MM.1S ENCFF869JMQ 188 bp overlap
ChIP MM1-S GSE43743.CTCF.MM1-S 150 bp overlap
ChIP NB4 ENCFF155DNY 208 bp overlap
ChIP NCI-H929 ENCFF305JAB 275 bp overlap
ChIP NCI-H929 ENCFF305JAB 359 bp overlap
ChIP OCI-LY1 ENCFF455ESK 209 bp overlap
ChIP OCI-LY3 ENCFF939BYJ 227 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 353 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 230 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 124 bp overlap
ChIP PC-3 ENCFF487TUI 227 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 110 bp overlap
ChIP PC-9 ENCFF539ULB 391 bp overlap
ChIP Panc1 ENCFF056JQX 221 bp overlap
ChIP Panc1 ENCFF056JQX 391 bp overlap
ChIP Peyer's patch ENCFF828IDE 276 bp overlap
ChIP RWPE2 ENCFF911IEE 355 bp overlap
ChIP SK-N-SH ENCFF575DMG 281 bp overlap
ChIP SU-DHL-6 ENCFF116KKR 287 bp overlap
ChIP VCaP ENCFF858YQT 387 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 90 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 141 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 216 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 101 bp overlap
ChIP WI38 ENCFF841AXJ 256 bp overlap
ChIP WTC11 ENCFF658QVH 188 bp overlap
ChIP activated CD4-positive, alpha-beta T cell ENCFF095PZX 232 bp overlap
ChIP activated CD8-positive, alpha-beta T cell ENCFF006MHW 391 bp overlap
ChIP adrenal gland ENCFF257AUK 320 bp overlap
ChIP adrenal gland ENCFF257AUK 351 bp overlap
ChIP adrenal gland ENCFF596QXB 267 bp overlap
ChIP adrenal gland ENCFF678WUB 243 bp overlap
ChIP adrenal gland ENCFF886WNR 157 bp overlap
ChIP ascending aorta ENCFF451CCT 266 bp overlap
ChIP astrocyte of the cerebellum ENCFF511OCS 274 bp overlap
ChIP astrocyte of the spinal cord ENCFF213GKL 207 bp overlap
ChIP body of pancreas ENCFF269EDN 323 bp overlap
ChIP bonchial_epithelial ENCSR000DXI.CTCF.bonchial_epithelial 113 bp overlap
ChIP brain ENCFF163BBN 391 bp overlap
ChIP brain ENCFF685VRG 391 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 100 bp overlap
ChIP bronchial epithelial cell ENCFF500SEA 214 bp overlap
ChIP cardiac fibroblast ENCFF326EDY 228 bp overlap
ChIP cardiac muscle cell ENCFF728JSA 129 bp overlap
ChIP cardiac muscle cell ENCFF777TNC 288 bp overlap
ChIP chondrocyte ENCFF134ORZ 378 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 126 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF377YBQ 300 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF433UFM 343 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF457ZGY 352 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF696ASB 380 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF851XUX 335 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF883PFA 309 bp overlap
ChIP endodermal cell ENCFF471YCZ 270 bp overlap
ChIP endothelial cell ENCFF663LIE 391 bp overlap
ChIP endothelial cell ENCFF663LIE 329 bp overlap
ChIP endothelial cell of umbilical vein ENCFF455OQM 190 bp overlap
ChIP endothelial cell of umbilical vein ENCFF677IZD 234 bp overlap
ChIP endothelial cell of umbilical vein ENCFF947JAB 301 bp overlap
ChIP epithelial cell of esophagus ENCFF946GGT 249 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 291 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 257 bp overlap
ChIP esophagus muscularis mucosa ENCFF534UGM 187 bp overlap
ChIP esophagus squamous epithelium ENCFF037IYT 283 bp overlap
ChIP fibroblast of dermis ENCFF986DNJ 280 bp overlap
ChIP fibroblast of lung ENCFF356FDN 254 bp overlap
ChIP fibroblast of lung ENCFF505HVQ 227 bp overlap
ChIP fibroblast of mammary gland ENCFF109AZU 224 bp overlap
ChIP fibroblast of pulmonary artery ENCFF742RSV 241 bp overlap
ChIP fibroblast of the aortic adventitia ENCFF639DMR 217 bp overlap
ChIP fibroblast of villous mesenchyme ENCFF345VQO 115 bp overlap
ChIP fibroblast_FORESKIN ENCSR000DUH.CTCF.fibroblast_FORESKIN 147 bp overlap
ChIP foreskin fibroblast ENCFF219EBQ 269 bp overlap
ChIP foreskin keratinocyte ENCFF980OWR 267 bp overlap
ChIP gastroesophageal sphincter ENCFF546QIK 338 bp overlap
ChIP gastroesophageal sphincter ENCFF607YRA 146 bp overlap
ChIP glutamatergic neuron ENCFF816BTR 391 bp overlap
ChIP heart left ventricle ENCFF185CKY 300 bp overlap
ChIP heart left ventricle ENCFF244ZHV 325 bp overlap
ChIP heart left ventricle ENCFF354HOQ 318 bp overlap
ChIP heart left ventricle ENCFF505HGD 296 bp overlap
ChIP heart left ventricle ENCFF548XHH 284 bp overlap
ChIP heart left ventricle ENCFF769GAB 353 bp overlap
ChIP heart left ventricle ENCFF888ERQ 315 bp overlap
ChIP heart right ventricle ENCFF022KFI 321 bp overlap
ChIP heart right ventricle ENCFF027ORH 188 bp overlap
ChIP heart right ventricle ENCFF063GTP 313 bp overlap
ChIP heart right ventricle ENCFF435TKW 293 bp overlap
ChIP heart right ventricle ENCFF577TID 293 bp overlap
ChIP heart right ventricle ENCFF725NNJ 344 bp overlap
ChIP heart right ventricle ENCFF767XJQ 292 bp overlap
ChIP heart right ventricle ENCFF979TCT 374 bp overlap
ChIP keratinocyte ENCFF046PBT 113 bp overlap
ChIP keratinocyte ENCFF667ULX 239 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 163 bp overlap
ChIP kidney epithelial cell ENCFF173LWY 251 bp overlap
ChIP left ventricle myocardium inferior ENCFF161DPW 218 bp overlap
ChIP lower lobe of left lung ENCFF150FXW 291 bp overlap
ChIP myotube ENCFF981UHL 288 bp overlap
ChIP nephron progenitor cell ENCFF455DMI 383 bp overlap
ChIP neural crest cell ENCFF182LWK 327 bp overlap
ChIP neural progenitor cell ENCFF420RBO 240 bp overlap
ChIP neural progenitor cell ENCFF581WPG 391 bp overlap
ChIP osteoblast ENCFF491ZJZ 301 bp overlap
ChIP osteocyte ENCFF929FPD 210 bp overlap
ChIP placenta ENCFF029PHY 213 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 317 bp overlap
ChIP prostate gland ENCFF655GBO 256 bp overlap
ChIP psoas muscle ENCFF305ZVF 296 bp overlap
ChIP retinal pigment epithelial cell ENCFF810AAG 222 bp overlap
ChIP right atrium auricular region ENCFF696NTN 355 bp overlap
ChIP right lobe of liver ENCFF011NDG 189 bp overlap
ChIP right lobe of liver ENCFF250KSY 349 bp overlap
ChIP right lobe of liver ENCFF523SCB 309 bp overlap
ChIP sigmoid colon ENCFF397ZZF 331 bp overlap
ChIP skeletal muscle myoblast ENCFF813BQI 243 bp overlap
ChIP smooth muscle cell ENCFF656FBT 268 bp overlap
ChIP thyroid gland ENCFF300RYK 339 bp overlap
ChIP transverse colon ENCFF594PFO 312 bp overlap
ChIP transverse colon ENCFF653EYS 285 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 237 bp overlap
ChIP upper lobe of right lung ENCFF065JCM 314 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF093OYK 194 bp overlap
EGR1 1 dataset
ChIP K562 ENCFF006PJY 245 bp overlap
HINFP 1 dataset
ChIP K562 ENCFF361QXJ 285 bp overlap
INSM1 1 dataset
Motif DE_12h DE_12h-INSM1_MA0155.1 12 bp overlap
MAZ 1 dataset
ChIP K562 ENCFF333ZIV 315 bp overlap
NFIA 1 dataset
Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap
NFIC 2 datasets
Motif DE_12h DE_12h-NFIC_MA0161.3 7 bp overlap
ChIP K562 ENCFF167YID 361 bp overlap
NFIX 1 dataset
Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap
PLAG1 1 dataset
Motif DE_12h DE_12h-PLAG1_MA0163.1 14 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 280 bp overlap
RAD21 15 datasets
ChIP A549 ENCFF047SFC 247 bp overlap
ChIP A549 ENCFF264AHX 381 bp overlap
ChIP GM12878 ENCFF101UQZ 191 bp overlap
ChIP H1 ENCFF698EWO 165 bp overlap
ChIP H1 ENCFF967OJF 155 bp overlap
ChIP HCT116 ENCFF568PEO 79 bp overlap
ChIP HepG2 ENCFF906QIS 220 bp overlap
ChIP HepG2 ENCFF963UBJ 231 bp overlap
ChIP IMR-90 ENCFF752PTH 222 bp overlap
ChIP Ishikawa ENCFF570JVV 199 bp overlap
ChIP K-562 ENCSR000BKV.RAD21.K-562 96 bp overlap
ChIP K562 ENCFF066JWO 293 bp overlap
ChIP K562 ENCFF169SQI 137 bp overlap
ChIP K562 ENCFF634XYR 249 bp overlap
ChIP liver ENCFF522JHE 218 bp overlap
RAD51 1 dataset
ChIP K562 ENCFF133ELP 63 bp overlap
RBPJ 1 dataset
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
REST 1 dataset
ChIP K562 ENCFF688UKW 121 bp overlap
SETDB1 2 datasets
ChIP K-562 ENCSR000EWI.SETDB1.K-562 179 bp overlap
ChIP K562 ENCFF745PAW 391 bp overlap
SMAD2 1 dataset
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
SMC3 3 datasets
ChIP A549 ENCFF079FKB 312 bp overlap
ChIP IMR-90 ENCFF627LON 227 bp overlap
ChIP K562 ENCFF582XIX 241 bp overlap
STAG1 1 dataset
ChIP HepG2 ENCFF843EBZ 292 bp overlap
ZBTB33 5 datasets
ChIP GM12878 ENCFF818EFA 194 bp overlap
ChIP HepG2 ENCFF778UKV 265 bp overlap
ChIP K562 ENCFF875HLX 391 bp overlap
ChIP MCF-7 ENCFF622BUU 321 bp overlap
ChIP SK-N-SH ENCFF667JYU 314 bp overlap
ZNF280A 1 dataset
ChIP K562 ENCFF706EWX 360 bp overlap
ZNF669 1 dataset
Motif DE_12h DE_12h-ZNF669_MA1985.1 15 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
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