chr3 : 27,717,292 27,717,729
437 bp 17 TFs 2 linked genes
This 437 bp open chromatin element is linked to LINC02084 and EOMES and is bound by 17 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
LINC02084 4.4 kb Proximal Proximity
EOMES 5.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:27,712,292 – 27,722,729
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
17 transcription factors
Source
Cell type
BCOR 1 dataset
ChIP WA01 GSE104690.BCOR.WA01 268 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 337 bp overlap
BRD4 1 dataset
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 190 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF335XTP 295 bp overlap
ChIP BLaER1 ENCFF896HSY 376 bp overlap
EZH2 9 datasets
ChIP A-673 ENCSR179SAO.EZH2.A-673 323 bp overlap
ChIP A673 ENCFF955JRZ 299 bp overlap
ChIP A673 ENCFF955JRZ 437 bp overlap
ChIP H1 ENCFF232NZA 437 bp overlap
ChIP endothelial_umbilical-vein ENCSR000ATA.EZH2.endothelial_umbilical-vein 234 bp overlap
ChIP fibroblast of lung ENCFF479BAW 437 bp overlap
ChIP fibroblast of lung ENCFF479BAW 362 bp overlap
ChIP neural progenitor cell ENCFF018MKA 72 bp overlap
ChIP neural progenitor cell ENCFF472NFV 114 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-2 188 bp overlap
IRF2 1 dataset
ChIP keratinocyte_DOX GSE135677.IRF2.keratinocyte_DOX 180 bp overlap
JARID2 5 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 222 bp overlap
ChIP EDOMIPS2 GSE48516.JARID2.EDOMIPS2 317 bp overlap
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 437 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 344 bp overlap
ChIP UTEIPS7 GSE48516.JARID2.UTEIPS7 416 bp overlap
MLLT1 2 datasets
ChIP GM12878 ENCFF995GXC 368 bp overlap
ChIP GM12878 ENCFF995GXC 368 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 315 bp overlap
NUTM1 1 dataset
ChIP NUT_DMSO GSE133122.NUTM1.NUT_DMSO 437 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 353 bp overlap
PCGF2 1 dataset
ChIP fibroblast_MET GSE55605.PCGF2.fibroblast_MET 328 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 383 bp overlap
RNF2 1 dataset
ChIP H1 ENCFF239FFS 376 bp overlap
SUZ12 5 datasets
ChIP H1 ENCFF881NFR 437 bp overlap
ChIP HEK293T_PCGF1356fl GSE119618.SUZ12.HEK293T_PCGF1356fl 299 bp overlap
ChIP HEK293T_PCGF2fl GSE119618.SUZ12.HEK293T_PCGF2fl 299 bp overlap
ChIP HEK293T_PCGF2fl_OHT GSE119618.SUZ12.HEK293T_PCGF2fl_OHT 297 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 165 bp overlap