chr3 : 27,707,999 27,708,552
553 bp 24 TFs 1 linked gene
This 553 bp open chromatin element is linked to LINC02084 and is bound by 24 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LINC02084 4.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:27,702,999 – 27,713,552
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
24 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP HeLa_DOX GSE40632.AFF4.HeLa_DOX 314 bp overlap
ARNTL 1 dataset
ChIP U2OS GSE44236.ARNTL.U2OS 159 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 256 bp overlap
BRD4 2 datasets
ChIP HeLa_JQ1 GSE151038.BRD4.HeLa_JQ1 169 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 171 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF896HSY 251 bp overlap
ESR1 3 datasets
ChIP Ishikawa ENCSR000BQR.ESR1.Ishikawa 156 bp overlap
ChIP Ishikawa ENCSR000BKL.ESR1.Ishikawa 156 bp overlap
ChIP MCF-7_E2 GSE14664.ESR1.MCF-7_E2 94 bp overlap
EZH2 2 datasets
ChIP RL_CPI169-10d GSE134136.EZH2.RL_CPI169-10d 191 bp overlap
ChIP SF8628 GSE94834.EZH2.SF8628 356 bp overlap
FOS 1 dataset
ChIP MCF-10A ENCSR000DON.FOS.MCF-10A 172 bp overlap
FOSL1 1 dataset
ChIP MG-63-3 GSE74230.FOSL1.MG-63-3 215 bp overlap
FOSL2 1 dataset
ChIP LPS141 GSE111253.FOSL2.LPS141 163 bp overlap
FOXA1 9 datasets
ChIP LNCaP-C4-2B_CST GSE123618.FOXA1.LNCaP-C4-2B_CST 158 bp overlap
ChIP LNCaP_SHFOXA1_R1881 GSE37345.FOXA1.LNCaP_SHFOXA1_R1881 108 bp overlap
ChIP LNCaP_VEH GSE114266.FOXA1.LNCaP_VEH 218 bp overlap
ChIP MCF-7 ERP000380.FOXA1.MCF-7 164 bp overlap
ChIP MCF-7-TAMR-1_4OH-Tam GSE75201.FOXA1.MCF-7-TAMR-1_4OH-Tam 124 bp overlap
ChIP MCF-7_JC4695 GSE126004.FOXA1.MCF-7_JC4695 193 bp overlap
ChIP T-47D_JC4745 GSE126004.FOXA1.T-47D_JC4745 211 bp overlap
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 249 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 289 bp overlap
FOXA2 1 dataset
ChIP KerCT GSE90454.FOXA2.KerCT 241 bp overlap
JUNB 1 dataset
ChIP MCF10A-Er-Src_EtOH GSE115597.JUNB.MCF10A-Er-Src_EtOH 155 bp overlap
JUND 2 datasets
ChIP HeLa-S3 ENCFF642OHL 250 bp overlap
ChIP HeLa-S3 ENCSR000EDH.JUND.HeLa-S3 196 bp overlap
MAX 1 dataset
ChIP HeLa-S3 ENCSR000EZF.MAX.HeLa-S3 124 bp overlap
MED1 3 datasets
ChIP HCT-116 GSE121798.MED1.HCT-116 273 bp overlap
ChIP hMSC-TERT4_osteoblast-D1 GSE113253.MED1.hMSC-TERT4_osteoblast-D1 110 bp overlap
ChIP hMSC-TERT4_osteoblast-D7 GSE113253.MED1.hMSC-TERT4_osteoblast-D7 192 bp overlap
MED25 1 dataset
ChIP PC-3_FLAG GSE133445.MED25.PC-3_FLAG 226 bp overlap
MYC 3 datasets
ChIP HeLa-S3 ENCSR000EZD.MYC.HeLa-S3 139 bp overlap
ChIP MCF-10A ENCSR000DOS.MYC.MCF-10A 202 bp overlap
ChIP MCF-10A ENCSR000DOM.MYC.MCF-10A 114 bp overlap
MYCN 2 datasets
ChIP SHEP-21N GSE80151.MYCN.SHEP-21N 208 bp overlap
ChIP SHEP-21N_DOX_0H GSE80151.MYCN.SHEP-21N_DOX_0H 208 bp overlap
NELFE 1 dataset
ChIP HeLa_DOX GSE125534.NELFE.HeLa_DOX 165 bp overlap
SMARCA4 4 datasets
ChIP A-549_AG15677 GSE132290.SMARCA4.A-549_AG15677 61 bp overlap
ChIP A-549_AG15678 GSE132290.SMARCA4.A-549_AG15678 59 bp overlap
ChIP A-549_AG15722 GSE132290.SMARCA4.A-549_AG15722 53 bp overlap
ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 57 bp overlap
STAT3 15 datasets
ChIP HCC70 GSE152203.STAT3.HCC70 161 bp overlap
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 153 bp overlap
ChIP HeLa-S3 ENCFF655DGU 253 bp overlap
ChIP HeLa-S3 ENCSR000EDC.STAT3.HeLa-S3 190 bp overlap
ChIP MCF-10A ENCSR000DOZ.STAT3.MCF-10A 185 bp overlap
ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 169 bp overlap
ChIP MCF-7_jc5836 GSE126004.STAT3.MCF-7_jc5836 211 bp overlap
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 258 bp overlap
ChIP MCF-7_jc5840 GSE126004.STAT3.MCF-7_jc5840 236 bp overlap
ChIP MCF10A-Er-Src_EtOH GSE115597.STAT3.MCF10A-Er-Src_EtOH 183 bp overlap
ChIP MCF10A-Er-Src_TAM GSE115597.STAT3.MCF10A-Er-Src_TAM 157 bp overlap
ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 242 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 227 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 223 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 166 bp overlap