chr3 : 24,145,507 24,145,660
153 bp 27 TFs 0 linked genes
This 153 bp open chromatin element has no linked target genes and is bound by 27 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:24,140,507 – 24,150,660
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
27 transcription factors
Source
Cell type
BRD2 3 datasets
ChIP MDA-MB-231_DMSO GSE116879.BRD2.MDA-MB-231_DMSO 52 bp overlap
ChIP MDA-MB-231_DMSO_rDNA GSE116879.BRD2.MDA-MB-231_DMSO_rDNA 52 bp overlap
ChIP MDA-MB-231_NTsiRNA GSE116879.BRD2.MDA-MB-231_NTsiRNA 130 bp overlap
BRD4 1 dataset
ChIP SUM229PE_neg_30nMtrametinib_24h GSE87418.BRD4.SUM229PE_neg_30nMtrametinib_24h 56 bp overlap
CRX 2 datasets
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 153 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 153 bp overlap
CTCF 1 dataset
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 153 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 153 bp overlap
FOSL1 1 dataset
ChIP BT-549 GSE46166.FOSL1.BT-549 153 bp overlap
FOSL2 1 dataset
ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 84 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 85 bp overlap
GATA2 1 dataset
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 128 bp overlap
GATA4 5 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 63 bp overlap
ChIP DE DE-GATA4-1 153 bp overlap
ChIP DE DE-GATA4-2 153 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 153 bp overlap
ChIP foregut GSE117136.GATA4.foregut 153 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 153 bp overlap
ChIP DE DE-GATA6-2 153 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 153 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 153 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 153 bp overlap
JUN 1 dataset
ChIP BT-549 GSE46166.JUN.BT-549 153 bp overlap
JUND 1 dataset
ChIP HeLa-S3 ENCSR000EDH.JUND.HeLa-S3 72 bp overlap
MED1 3 datasets
ChIP hMSC-TERT4_osteoblast-4H GSE113253.MED1.hMSC-TERT4_osteoblast-4H 153 bp overlap
ChIP hMSC-TERT4_osteoblast-D1 GSE113253.MED1.hMSC-TERT4_osteoblast-D1 153 bp overlap
ChIP hMSC-TERT4_osteoblast-D3 GSE113253.MED1.hMSC-TERT4_osteoblast-D3 88 bp overlap
NEUROD1 3 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 153 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 153 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 153 bp overlap
ONECUT1 2 datasets
ChIP H9 ERP004206.ONECUT1.H9 86 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 135 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 153 bp overlap
PDX1 1 dataset
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 153 bp overlap
PHIP 1 dataset
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 93 bp overlap
RAD21 1 dataset
ChIP SLK_CTCF-KD GSE138105.RAD21.SLK_CTCF-KD 138 bp overlap
SMARCA2 1 dataset
ChIP NPC_R1159Q_AM GSE122631.SMARCA2.NPC_R1159Q_AM 153 bp overlap
SMARCA4 5 datasets
ChIP A-549_AG15684 GSE132290.SMARCA4.A-549_AG15684 153 bp overlap
ChIP A-549_AG15686 GSE132290.SMARCA4.A-549_AG15686 153 bp overlap
ChIP A-549_AG15688 GSE132290.SMARCA4.A-549_AG15688 100 bp overlap
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 114 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 153 bp overlap
SMARCC1 1 dataset
ChIP Aska-SS_shSSX GSE108025.SMARCC1.Aska-SS_shSSX 153 bp overlap
SUPT5H 1 dataset
ChIP HeLa_DOX GSE125534.SUPT5H.HeLa_DOX 127 bp overlap
TP63 1 dataset
ChIP foreskin GSE126390.TP63.foreskin 54 bp overlap
ZBTB20 2 datasets
ChIP HEK293 ENCFF524ADK 51 bp overlap
ChIP HEK293 ENCSR460MBI.ZBTB20.HEK293 149 bp overlap
ZNF264 1 dataset
ChIP HEK293 GSE76494.ZNF264.HEK293 70 bp overlap