chr3 : 10,988,987 10,989,355
368 bp 22 TFs 1 linked gene
This 368 bp open chromatin element is linked to SLC6A1 and is bound by 22 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
SLC6A1 2.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:10,983,987 – 10,994,355
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
22 transcription factors
Source
Cell type
BCOR 1 dataset
ChIP K-562 ENCSR808AKZ.BCOR.K-562 235 bp overlap
BRD4 1 dataset
ChIP K-562_iBET-IFNG GSE138084.BRD4.K-562_iBET-IFNG 129 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 346 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 286 bp overlap
EZH2 1 dataset
ChIP A-1847 GSE95643.EZH2.A-1847 292 bp overlap
FOXO4 1 dataset
ChIP HepG2 ENCFF909ISL 250 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 368 bp overlap
ChIP DE DE-GATA4-2 349 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 356 bp overlap
ChIP DE DE-GATA6-2 359 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 297 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 331 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 356 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 297 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 368 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 167 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 287 bp overlap
KDM1A 2 datasets
ChIP H1 ENCFF696SGD 332 bp overlap
ChIP K-562 GSE117944.KDM1A.K-562 196 bp overlap
RBM25 3 datasets
ChIP K-562 ENCSR791OZM.RBM25.K-562 217 bp overlap
ChIP K562 ENCFF248CGR 161 bp overlap
ChIP K562 ENCFF957ORK 161 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 195 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 368 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 368 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 368 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 368 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 368 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 368 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 368 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 368 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 136 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 210 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 305 bp overlap
ZFP36 2 datasets
ChIP K-562 ENCSR776CYN.ZFP36.K-562 226 bp overlap
ChIP K562 ENCFF255RZG 207 bp overlap
ZKSCAN1 2 datasets
ChIP K-562 ENCSR882ERE.ZKSCAN1.K-562 312 bp overlap
ChIP K562 ENCFF977CBA 336 bp overlap
ZMYM3 3 datasets
ChIP K-562 ENCSR102KIN.ZMYM3.K-562 359 bp overlap
ChIP K-562_Ab_JH39-2-2F10 GSE97661.ZMYM3.K-562_Ab_JH39-2-2F10 146 bp overlap
ChIP K562 ENCFF361LXT 276 bp overlap
ZNF16 2 datasets
ChIP HEK293 ENCFF231FLW 240 bp overlap
ChIP HEK293 ENCSR093HXE.ZNF16.HEK293 244 bp overlap