chr3 : 7,756,407 7,757,043
636 bp 47 TFs 0 linked genes
This 636 bp open chromatin element has no linked target genes and is bound by 47 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:7,751,407 – 7,762,043
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
47 transcription factors
Source
Cell type
Arid3a 1 dataset
Motif DE_72h DE_72h-Arid3a_MA0151.1 6 bp overlap
BAF155 1 dataset
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 274 bp overlap
CEBPD 1 dataset
Motif DE_72h DE_72h-CEBPD_MA0836.3 8 bp overlap
Crx 1 dataset
Motif DE_72h DE_72h-Crx_MA0467.3 6 bp overlap
DPRX 1 dataset
Motif DE_72h DE_72h-DPRX_MA1480.2 9 bp overlap
DUX4 1 dataset
Motif DE_72h DE_72h-DUX4_MA0468.1 11 bp overlap
DUXA 1 dataset
Motif DE_72h DE_72h-DUXA_MA0884.2 13 bp overlap
Dux 1 dataset
Motif DE_72h DE_72h-Dux_MA0611.3 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 318 bp overlap
ERG 1 dataset
ChIP VCaP_shARID1A GSE110655.ERG.VCaP_shARID1A 210 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 520 bp overlap
ChIP DE DE-FOXA2-2 478 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 215 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 519 bp overlap
ChIP DE DE-GATA4-2 543 bp overlap
ChIP foregut GSE117136.GATA4.foregut 348 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 320 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 227 bp overlap
GATA5 1 dataset
Motif DE_72h DE_72h-GATA5_MA0766.3 8 bp overlap
GATA6 9 datasets
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 155 bp overlap
ChIP DE DE-GATA6-1 618 bp overlap
ChIP DE DE-GATA6-2 531 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 610 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 387 bp overlap
ChIP foregut GSE117136.GATA6.foregut 369 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 272 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 273 bp overlap
GSC 1 dataset
Motif DE_72h DE_72h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_72h DE_72h-GSC2_MA0891.2 6 bp overlap
Gata3 1 dataset
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
HAND2 1 dataset
Motif DE_72h DE_72h-HAND2_MA1638.2 6 bp overlap
HOXC13 1 dataset
Motif DE_72h DE_72h-HOXC13_MA0907.2 9 bp overlap
Lhx3 1 dataset
Motif DE_72h DE_72h-Lhx3_MA0135.2 12 bp overlap
MSC 1 dataset
Motif DE_72h DE_72h-MSC_MA0665.1 10 bp overlap
Mecom 1 dataset
Motif DE_72h DE_72h-Mecom_MA0029.2 11 bp overlap
OTX1 1 dataset
Motif DE_72h DE_72h-OTX1_MA0711.2 6 bp overlap
PITX1 1 dataset
Motif DE_72h DE_72h-PITX1_MA0682.3 6 bp overlap
PITX2 1 dataset
Motif DE_72h DE_72h-PITX2_MA1547.2 8 bp overlap
PITX3 1 dataset
Motif DE_72h DE_72h-PITX3_MA0714.2 6 bp overlap
POU1F1 1 dataset
Motif DE_72h DE_72h-POU1F1_MA0784.3 14 bp overlap
POU2F2 1 dataset
Motif DE_72h DE_72h-POU2F2_MA0507.3 13 bp overlap
POU2F3 1 dataset
Motif DE_72h DE_72h-POU2F3_MA0627.3 9 bp overlap
POU3F3 1 dataset
Motif DE_72h DE_72h-POU3F3_MA0788.1 13 bp overlap
Ptf1A 1 dataset
Motif DE_72h DE_72h-Ptf1A_MA1618.2 9 bp overlap
RHOXF1 1 dataset
Motif DE_72h DE_72h-RHOXF1_MA0719.2 6 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 339 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 344 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 250 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 379 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 501 bp overlap
SPIC 1 dataset
Motif DE_72h DE_72h-SPIC_MA0687.2 13 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 202 bp overlap
TEAD1 1 dataset
Motif DE_72h DE_72h-TEAD1_MA0090.4 9 bp overlap
TEAD4 1 dataset
Motif DE_72h DE_72h-TEAD4_MA0809.3 8 bp overlap
TRPS1 1 dataset
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
TWIST1 1 dataset
Motif DE_72h DE_72h-TWIST1_MA1123.3 8 bp overlap
Yy1 1 dataset
Motif DE_72h DE_72h-Yy1_MA0095.4 8 bp overlap
ZBTB18 1 dataset
Motif DE_72h DE_72h-ZBTB18_MA0698.2 11 bp overlap
ZNF85 1 dataset
Motif DE_72h DE_72h-ZNF85_MA1720.2 12 bp overlap