chr3 : 2,166,642 – 2,166,825
183 bp 28 TFs 0 linked genes
This 183 bp open chromatin element has no linked target genes and is bound by 28 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:2,161,642 – 2,171,825
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
28 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP_androgen-N_hypoxia-N GSE114732.AR.LNCaP_androgen-N_hypoxia-N 169 bp overlap
BRD4 1 dataset
ChIP MOLM-14_DMSO GSE65138.BRD4.MOLM-14_DMSO 172 bp overlap
CBX1 1 dataset
ChIP DKO GSE135580.CBX1.DKO 183 bp overlap
CBX5 1 dataset
ChIP HCT-116 GSE135580.CBX5.HCT-116 106 bp overlap
CDK9 1 dataset
ChIP MV4-11_DMSO GSE82116.CDK9.MV4-11_DMSO 153 bp overlap
CTCF 332 datasets
ChIP 22Rv1 ENCFF466OXN 183 bp overlap
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 183 bp overlap
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 183 bp overlap
ChIP 81-3 ERP002246.CTCF.81-3 159 bp overlap
ChIP A-375 GSE128346.CTCF.A-375 182 bp overlap
ChIP A-549 ENCSR000DPF.CTCF.A-549 176 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 174 bp overlap
ChIP A-549 ENCSR000AUE.CTCF.A-549 170 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 183 bp overlap
ChIP A549 ENCFF034FVO 183 bp overlap
ChIP A673 ENCFF123WOM 183 bp overlap
ChIP BC-3 GSE135740.CTCF.BC-3 123 bp overlap
ChIP BE2C ENCFF757SRF 151 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 183 bp overlap
ChIP BL41 GSE31485.CTCF.BL41 129 bp overlap
ChIP C4-2B ENCFF821XVN 183 bp overlap
ChIP COLO-829 GSE81945.CTCF.COLO-829 183 bp overlap
ChIP CUTLL1_DMSO GSE130140.CTCF.CUTLL1_DMSO 127 bp overlap
ChIP Caco-2 ENCFF753NZV 183 bp overlap
ChIP Caco-2 ENCFF934QYS 183 bp overlap
ChIP Caco-2 ENCSR000DQN.CTCF.Caco-2 151 bp overlap
ChIP D54 ENCSR000DKN.CTCF.D54 175 bp overlap
ChIP D721Med ENCFF513FYD 183 bp overlap
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
ChIP DND-41 ENCFF913MRA 183 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 154 bp overlap
ChIP DOHH2 ENCFF637WNW 183 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 183 bp overlap
Motif ES_0h ES_0h-CTCF_MA0139.2 15 bp overlap
ChIP FT282 GSE131931.CTCF.FT282 179 bp overlap
ChIP FT282_EV GSE131931.CTCF.FT282_EV 183 bp overlap
ChIP GM04025_B-lymphocytes GSE111170.CTCF.GM04025_B-lymphocytes 183 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 183 bp overlap
ChIP GM06990 ENCFF471OQT 183 bp overlap
ChIP GM06990 ENCSR000DQW.CTCF.GM06990 183 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 183 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 183 bp overlap
ChIP GM10248 ENCFF083HVS 155 bp overlap
ChIP GM12801 ENCSR000DQY.CTCF.GM12801 139 bp overlap
ChIP GM12864 ENCSR000DRB.CTCF.GM12864 164 bp overlap
ChIP GM12865 ENCFF067GFI 183 bp overlap
ChIP GM12865 ENCSR000DRE.CTCF.GM12865 134 bp overlap
ChIP GM12866 ENCSR000DRF.CTCF.GM12866 163 bp overlap
ChIP GM12871 ENCSR000DRL.CTCF.GM12871 109 bp overlap
ChIP GM12873 ENCSR000DRP.CTCF.GM12873 136 bp overlap
ChIP GM12874 ENCSR000DRR.CTCF.GM12874 160 bp overlap
ChIP GM12875 ENCFF081UCQ 183 bp overlap
ChIP GM12875 ENCSR000DRU.CTCF.GM12875 125 bp overlap
ChIP GM12878 ENCFF217EAX 183 bp overlap
ChIP GM12878 ENCFF485TGR 183 bp overlap
ChIP GM12878 ENCFF511URZ 183 bp overlap
ChIP GM12878 ENCFF635MMB 183 bp overlap
ChIP GM12878 GSE76922.CTCF.GM12878 183 bp overlap
ChIP GM12878 ENCSR000AKB.CTCF.GM12878 183 bp overlap
ChIP GM12878 ENCSR000DKV.CTCF.GM12878 169 bp overlap
ChIP GM12878 ENCSR000DRZ.CTCF.GM12878 162 bp overlap
ChIP GM12878 ENCSR000DZN.CTCF.GM12878 163 bp overlap
ChIP GM12878 ERP002246.CTCF.GM12878 126 bp overlap
ChIP GM13977 ENCFF528ESQ 171 bp overlap
ChIP GM13977 ENCSR000DLB.CTCF.GM13977 130 bp overlap
ChIP GM23338 ENCFF531QOI 149 bp overlap
ChIP GM23338 ENCFF772DML 101 bp overlap
ChIP H1 ENCFF414GZI 183 bp overlap
ChIP H1 ENCFF764RHO 120 bp overlap
ChIP H54 ENCFF255TVO 183 bp overlap
ChIP H9 ENCFF152GTF 183 bp overlap
ChIP H9 ENCFF152GTF 76 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 183 bp overlap
ChIP HAP1 GSE94992.CTCF.HAP1 183 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 183 bp overlap
ChIP HAP1_SCC4KO GSE94992.CTCF.HAP1_SCC4KO 163 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 183 bp overlap
ChIP HAP1_WaplKO-33 GSE94992.CTCF.HAP1_WaplKO-33 183 bp overlap
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.CTCF.HAP1_WaplKO-33_SCC4KO 183 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 183 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 183 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 183 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 183 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 183 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 183 bp overlap
ChIP HEC-1-B GSE139679.CTCF.HEC-1-B 156 bp overlap
ChIP HEC-1-B_F-insertion GSE140868.CTCF.HEC-1-B_F-insertion 159 bp overlap
ChIP HEC-1-B_FFRR-insertion GSE140868.CTCF.HEC-1-B_FFRR-insertion 152 bp overlap
ChIP HEC-1-B_FFRR-mutation GSE140868.CTCF.HEC-1-B_FFRR-mutation 162 bp overlap
ChIP HEC-1-B_R1-insertion GSE140868.CTCF.HEC-1-B_R1-insertion 147 bp overlap
ChIP HEC-1-B_R1-mutation GSE140868.CTCF.HEC-1-B_R1-mutation 171 bp overlap
ChIP HEC-1-B_RF-insertion GSE140868.CTCF.HEC-1-B_RF-insertion 147 bp overlap
ChIP HEC-1-B_RF-mutation GSE140868.CTCF.HEC-1-B_RF-mutation 183 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 183 bp overlap
ChIP HEC-1-B_a12-CBS-deletion GSE140868.CTCF.HEC-1-B_a12-CBS-deletion 130 bp overlap
ChIP HEC-1-B_ac1-CBS-deletion GSE140868.CTCF.HEC-1-B_ac1-CBS-deletion 149 bp overlap
ChIP HEK293 ENCFF498RMM 183 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 164 bp overlap
ChIP HEK293T GSE115862.CTCF.HEK293T 183 bp overlap
ChIP HL-60 ERP008568.CTCF.HL-60 183 bp overlap
ChIP HL-60 ENCSR000DUP.CTCF.HL-60 183 bp overlap
ChIP HT-1080_CBL0137-6h GSE122462.CTCF.HT-1080_CBL0137-6h 183 bp overlap
ChIP HUES-64 GSE97394.CTCF.HUES-64 183 bp overlap
ChIP HUES-64_DNMT-KO GSE97394.CTCF.HUES-64_DNMT-KO 149 bp overlap
ChIP HeLa GSE126990.CTCF.HeLa 183 bp overlap
ChIP HeLa-Kyoto GSE138405.CTCF.HeLa-Kyoto 183 bp overlap
ChIP HeLa-Kyoto GSE102884.CTCF.HeLa-Kyoto 183 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.CTCF.HeLa-Kyoto_PDS5-depleted 183 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 183 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL_PDS-depleted 183 bp overlap
ChIP HeLa-S3 ENCFF565UFR 136 bp overlap
ChIP HeLa-S3 ENCSR000DUB.CTCF.HeLa-S3 133 bp overlap
ChIP HeLa-S3 ENCSR000DLO.CTCF.HeLa-S3 114 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 183 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 183 bp overlap
ChIP HeLa-S3_unsynchro GSE108173.CTCF.HeLa-S3_unsynchro 183 bp overlap
ChIP HeLa_dC9Sun-D3AMut_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3AMut_MIR152 167 bp overlap
ChIP HeLa_dC9Sun-D3A_CDCC85C GSE107607.CTCF.HeLa_dC9Sun-D3A_CDCC85C 183 bp overlap
ChIP HeLa_dC9Sun-D3A_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3A_MIR152 183 bp overlap
ChIP HeLa_dC9Sun-D3A_SHB GSE107607.CTCF.HeLa_dC9Sun-D3A_SHB 176 bp overlap
ChIP Hep-G2 ENCSR000DLS.CTCF.Hep-G2 112 bp overlap
ChIP ID00014 GSE76922.CTCF.ID00014 183 bp overlap
ChIP K-562_11698 GSE131349.CTCF.K-562_11698 176 bp overlap
ChIP K-562_12040 GSE131349.CTCF.K-562_12040 126 bp overlap
ChIP K-562_13004 GSE131349.CTCF.K-562_13004 154 bp overlap
ChIP K-562_13189 GSE131349.CTCF.K-562_13189 151 bp overlap
ChIP K-562_14259 GSE131349.CTCF.K-562_14259 123 bp overlap
ChIP K-562_14376 GSE131349.CTCF.K-562_14376 110 bp overlap
ChIP K-562_15173 GSE131349.CTCF.K-562_15173 113 bp overlap
ChIP K-562_15776 GSE131349.CTCF.K-562_15776 140 bp overlap
ChIP K-562_7140 GSE131349.CTCF.K-562_7140 178 bp overlap
ChIP K-562_8005 GSE131349.CTCF.K-562_8005 117 bp overlap
ChIP K-562_CRISPRa_N4293 GSE131349.CTCF.K-562_CRISPRa_N4293 150 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.CTCF.K-562_enCRISPRi-KL 121 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 183 bp overlap
ChIP KMS-11_NSD2-High GSE131651.CTCF.KMS-11_NSD2-High 133 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 176 bp overlap
ChIP Kelly_shLUC-res GSE115248.CTCF.Kelly_shLUC-res 122 bp overlap
ChIP LNCAP ENCFF223HIG 183 bp overlap
ChIP LNCAP ENCFF223HIG 183 bp overlap
ChIP LNCAP ENCFF700QXT 183 bp overlap
ChIP LNCAP ENCFF700QXT 183 bp overlap
ChIP LNCaP ENCSR315NAC.CTCF.LNCaP 183 bp overlap
ChIP LNCaP ENCSR000DMF.CTCF.LNCaP 153 bp overlap
ChIP LNCaP ENCSR000DME.CTCF.LNCaP 144 bp overlap
ChIP LNCaP clone FGC ENCFF519YVI 172 bp overlap
ChIP LNCaP clone FGC ENCFF957KCI 172 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 183 bp overlap
ChIP LNCaP_Ctrl GSE125639.CTCF.LNCaP_Ctrl 183 bp overlap
ChIP LNCaP_hydroxy_10nM_4h ENCSR673WZL.CTCF.LNCaP_hydroxy_10nM_4h 183 bp overlap
ChIP Loucy ENCFF359TVQ 117 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 183 bp overlap
ChIP MCF-7 ENCFF139NQI 183 bp overlap
ChIP MCF-7 ENCFF198DQX 183 bp overlap
ChIP MCF-7 ENCFF210JUZ 183 bp overlap
ChIP MCF-7 ENCFF494VXA 183 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 183 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 173 bp overlap
ChIP MCF-7 GSE137216.CTCF.MCF-7 167 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 166 bp overlap
ChIP MCF-7 ENCSR000DMS.CTCF.MCF-7 133 bp overlap
ChIP MCF-7 ERP000380.CTCF.MCF-7 104 bp overlap
ChIP MCF-7L_t0 GSE108787.CTCF.MCF-7L_t0 183 bp overlap
ChIP MCF-7L_t1 GSE108787.CTCF.MCF-7L_t1 183 bp overlap
ChIP MCF-7L_t24 GSE108787.CTCF.MCF-7L_t24 183 bp overlap
ChIP MCF-7_HYPOXIA GSE78113.CTCF.MCF-7_HYPOXIA 183 bp overlap
ChIP MCF-7_NORMOXIA GSE78113.CTCF.MCF-7_NORMOXIA 183 bp overlap
ChIP MCF-7_TAM ERP000783.CTCF.MCF-7_TAM 108 bp overlap
ChIP MCF-7_TAM ERP000380.CTCF.MCF-7_TAM 112 bp overlap
ChIP MM1-S ENCSR402IDP.CTCF.MM1-S 183 bp overlap
ChIP NB4 ENCFF155DNY 183 bp overlap
ChIP NB4 ENCSR000DWN.CTCF.NB4 183 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 183 bp overlap
ChIP NCI-H929 ENCFF305JAB 167 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 183 bp overlap
ChIP OCI-LY1 ENCFF455ESK 183 bp overlap
ChIP OCI-LY3 ENCFF939BYJ 183 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 183 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 109 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 183 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 183 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 183 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 183 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 183 bp overlap
ChIP Panc1 ENCFF056JQX 183 bp overlap
ChIP Peyer's patch ENCFF828IDE 183 bp overlap
ChIP Peyers-patch ENCSR799WDT.CTCF.Peyers-patch 179 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 183 bp overlap
ChIP RWPE2 ENCFF911IEE 183 bp overlap
ChIP SEM GSE117864.CTCF.SEM 170 bp overlap
ChIP SH-SY5Y GSE101295.CTCF.SH-SY5Y 176 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 183 bp overlap
ChIP SK-N-SH ENCFF731NJX 183 bp overlap
ChIP SK-N-SH GSE76815.CTCF.SK-N-SH 183 bp overlap
ChIP SK-N-SH ENCSR000BLX.CTCF.SK-N-SH 180 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 177 bp overlap
ChIP SK-N-SH ENCSR000EIC.CTCF.SK-N-SH 163 bp overlap
ChIP SLK_Ctrl GSE138105.CTCF.SLK_Ctrl 183 bp overlap
ChIP SU-DHL-6 ENCFF116KKR 183 bp overlap
ChIP SU-DHL-6 ENCSR125DKL.CTCF.SU-DHL-6 163 bp overlap
ChIP T-47D GSE111923.CTCF.T-47D 183 bp overlap
ChIP T-47D GSE120162.CTCF.T-47D 183 bp overlap
ChIP T-47D_D538G GSE148277.CTCF.T-47D_D538G 183 bp overlap
ChIP T-47D_serum GSE120162.CTCF.T-47D_serum 135 bp overlap
ChIP THP-1_PMA_Dex-0h GSE103477.CTCF.THP-1_PMA_Dex-0h 155 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-000m 169 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-240m 183 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-020m-Flavo-000m 183 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-025m-Flavo-000m 183 bp overlap
ChIP THP-1_Pam3csk-030m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-030m-Flavo-000m 183 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-045m-Flavo-000m 183 bp overlap
ChIP THP-1_Pam3csk-060m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-060m-Flavo-000m 183 bp overlap
ChIP THP-1_Pam3csk-120m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-120m-Flavo-000m 183 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.CTCF.THP-1_Pam3csk-150m-Flavo-030m 183 bp overlap
ChIP THP-1_Pam3csk-180m-Flavo-060m GSE103477.CTCF.THP-1_Pam3csk-180m-Flavo-060m 183 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-360m-Flavo-240m 183 bp overlap
ChIP THP-1_siCtrl-NS1-Pam3csk-0h GSE103477.CTCF.THP-1_siCtrl-NS1-Pam3csk-0h 183 bp overlap
ChIP THP-1_siCtrl-NS1-Pam3csk-4h GSE103477.CTCF.THP-1_siCtrl-NS1-Pam3csk-4h 183 bp overlap
ChIP THP-1_siCtrl-NS1-Pam3csk-7h-Flavo-3h GSE103477.CTCF.THP-1_siCtrl-NS1-Pam3csk-7h-Flavo-3h 183 bp overlap
ChIP THP-1_siCtrl-eGFP-Pam3csk-0h GSE103477.CTCF.THP-1_siCtrl-eGFP-Pam3csk-0h 183 bp overlap
ChIP THP-1_siCtrl-eGFP-Pam3csk-4h GSE103477.CTCF.THP-1_siCtrl-eGFP-Pam3csk-4h 183 bp overlap
ChIP THP-1_siNIPBL-NS1-Pam3csk-4h GSE103477.CTCF.THP-1_siNIPBL-NS1-Pam3csk-4h 183 bp overlap
ChIP THP-1_siNIPBL-NS1-Pam3csk-7h-Flavo-3h GSE103477.CTCF.THP-1_siNIPBL-NS1-Pam3csk-7h-Flavo-3h 183 bp overlap
ChIP THP-1_siNIPBL-eGFP-Pam3csk-4h GSE103477.CTCF.THP-1_siNIPBL-eGFP-Pam3csk-4h 183 bp overlap
ChIP THP-1_siWAPL-NS1-Pam3csk-4h GSE103477.CTCF.THP-1_siWAPL-NS1-Pam3csk-4h 183 bp overlap
ChIP THP-1_siWAPL-NS1-Pam3csk-7h-Flavo-3h GSE103477.CTCF.THP-1_siWAPL-NS1-Pam3csk-7h-Flavo-3h 183 bp overlap
ChIP THP-1_siWAPL-eGFP-Pam3csk-4h GSE103477.CTCF.THP-1_siWAPL-eGFP-Pam3csk-4h 183 bp overlap
ChIP VCaP ENCFF858YQT 183 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 183 bp overlap
ChIP VCaP_ETOH GSE84432.CTCF.VCaP_ETOH 183 bp overlap
ChIP VCaP_R1881 GSE84432.CTCF.VCaP_R1881 183 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 136 bp overlap
ChIP WA01_MESEN_STEM GSE52457.CTCF.WA01_MESEN_STEM 178 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 128 bp overlap
ChIP WA09 GSE105028.CTCF.WA09 163 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 183 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 175 bp overlap
ChIP ZR751 ERP000783.CTCF.ZR751 164 bp overlap
ChIP astrocyte of the cerebellum ENCFF511OCS 183 bp overlap
ChIP astrocyte_cerebellum ENCSR000DSZ.CTCF.astrocyte_cerebellum 137 bp overlap
ChIP bonchial_epithelial ENCSR000DXI.CTCF.bonchial_epithelial 183 bp overlap
ChIP brain ENCFF067KUH 183 bp overlap
ChIP brain ENCFF163BBN 168 bp overlap
ChIP brain ENCFF685VRG 156 bp overlap
ChIP cardiac muscle cell ENCFF777TNC 183 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 183 bp overlap
ChIP chondrocyte ENCFF134ORZ 183 bp overlap
ChIP colon_transverse ENCSR907BES.CTCF.colon_transverse 122 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 183 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-pos 179 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 183 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 169 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF245PVD 183 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF282ONV 183 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF311KBD 183 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF628TCI 183 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF748IBN 183 bp overlap
ChIP endodermal cell ENCFF471YCZ 183 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 183 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 183 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 160 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 182 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 183 bp overlap
ChIP epithelial_retinal_pigment ENCSR000DVI.CTCF.epithelial_retinal_pigment 183 bp overlap
ChIP erythroid_Don001 GSE137982.CTCF.erythroid_Don001 183 bp overlap
ChIP fibroblast of villous mesenchyme ENCFF345VQO 183 bp overlap
ChIP fibroblast_VILLOUS_MESENCHYME ENCSR000DVQ.CTCF.fibroblast_VILLOUS_MESENCHYME 183 bp overlap
ChIP foreskin keratinocyte ENCFF980OWR 183 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 183 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 183 bp overlap
ChIP hESC_D2 GSE116862.CTCF.hESC_D2 183 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 183 bp overlap
ChIP hESC_D7 GSE116862.CTCF.hESC_D7 183 bp overlap
ChIP hESC_D80 GSE116862.CTCF.hESC_D80 183 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 183 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 183 bp overlap
ChIP heart left ventricle ENCFF244ZHV 183 bp overlap
ChIP heart left ventricle ENCFF548XHH 183 bp overlap
ChIP heart left ventricle ENCFF842XRG 183 bp overlap
ChIP heart right ventricle ENCFF027ORH 183 bp overlap
ChIP heart right ventricle ENCFF063GTP 183 bp overlap
ChIP heart right ventricle ENCFF435TKW 183 bp overlap
ChIP heart right ventricle ENCFF577TID 183 bp overlap
ChIP heart right ventricle ENCFF725NNJ 183 bp overlap
ChIP heart right ventricle ENCFF767XJQ 183 bp overlap
ChIP hepatocyte ENCFF263BLJ 183 bp overlap
ChIP hepatocyte ENCSR252QYR.CTCF.hepatocyte 183 bp overlap
ChIP hepatocyte ERP000395.CTCF.hepatocyte 143 bp overlap
ChIP hiPSC_Angelman GSE117283.CTCF.hiPSC_Angelman 183 bp overlap
ChIP islet ERP004003.CTCF.islet 183 bp overlap
ChIP islet GSE23784.CTCF.islet 182 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 183 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 175 bp overlap
ChIP keratinocyte ENCSR000ALJ.CTCF.keratinocyte 152 bp overlap
ChIP kidney epithelial cell ENCFF173LWY 183 bp overlap
ChIP left ventricle myocardium inferior ENCFF161DPW 183 bp overlap
ChIP leukemia GSE142161.CTCF.leukemia 183 bp overlap
ChIP leukemia_CEBPA-168h GSE142161.CTCF.leukemia_CEBPA-168h 179 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 183 bp overlap
ChIP leukemia_CEBPA-96h GSE142161.CTCF.leukemia_CEBPA-96h 183 bp overlap
ChIP medulloblastoma ENCSR000DMY.CTCF.medulloblastoma 153 bp overlap
ChIP nephron ENCFF589HXU 183 bp overlap
ChIP nephron progenitor cell ENCFF455DMI 183 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 183 bp overlap
ChIP neural cell ENCFF335ADI 147 bp overlap
ChIP neural crest cell ENCFF182LWK 154 bp overlap
ChIP neural crest cell ENCFF182LWK 110 bp overlap
ChIP neural progenitor cell ENCFF420RBO 183 bp overlap
ChIP neural progenitor cell ENCFF581WPG 183 bp overlap
ChIP neural progenitor cell ENCFF581WPG 154 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 183 bp overlap
ChIP neuroblastoma GSE115862.CTCF.neuroblastoma 183 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 183 bp overlap
ChIP osteocyte ENCFF929FPD 183 bp overlap
ChIP parathyroid adenoma ENCFF173NJK 183 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 183 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d3 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d3 183 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d6 183 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 129 bp overlap
ChIP primary-glioblastoma_G567 GSE121601.CTCF.primary-glioblastoma_G567 183 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 183 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 162 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 183 bp overlap
ChIP retina_AB1-RB GSE86981.CTCF.retina_AB1-RB 153 bp overlap
ChIP retinal pigment epithelial cell ENCFF810AAG 183 bp overlap
ChIP smooth muscle cell ENCFF656FBT 132 bp overlap
ChIP smooth-muscle-cell ENCSR261VAS.CTCF.smooth-muscle-cell 183 bp overlap
ChIP testis ENCFF919VBQ 183 bp overlap
ChIP testis ENCSR753RME.CTCF.testis 182 bp overlap
ChIP thyroid gland ENCFF300RYK 183 bp overlap
ChIP thyroid-gland ENCSR033KMZ.CTCF.thyroid-gland 183 bp overlap
ChIP tibial-nerve ENCSR875NEW.CTCF.tibial-nerve 183 bp overlap
ChIP tibial-nerve ENCSR793YAD.CTCF.tibial-nerve 174 bp overlap
ChIP transverse colon ENCFF594PFO 183 bp overlap
ChIP transverse colon ENCFF653EYS 183 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 183 bp overlap
ChIP upper lobe of right lung ENCFF065JCM 183 bp overlap
CTCFL 1 dataset
ChIP Kelly_shLUC-res GSE115248.CTCFL.Kelly_shLUC-res 131 bp overlap
DUX4 1 dataset
Motif ES_0h ES_0h-DUX4_MA0468.1 11 bp overlap
ESR1 5 datasets
ChIP MCF-7 GSE35109.ESR1.MCF-7 123 bp overlap
ChIP MCF-7 GSE119057.ESR1.MCF-7 161 bp overlap
ChIP MCF-7_ER_t20 GSE119057.ESR1.MCF-7_ER_t20 170 bp overlap
ChIP MCF-7_ER_t50 GSE119057.ESR1.MCF-7_ER_t50 162 bp overlap
ChIP MCF-7_ER_t80 GSE119057.ESR1.MCF-7_ER_t80 155 bp overlap
HOXB13 1 dataset
ChIP LNCaP GSE56288.HOXB13.LNCaP 183 bp overlap
HOXC13 2 datasets
Motif DE_12h DE_12h-HOXC13_MA0907.2 9 bp overlap
Motif ES_0h ES_0h-HOXC13_MA0907.2 9 bp overlap
MED1 1 dataset
ChIP dopaminergic-neuron_Dopamine_neurons GSE93905.MED1.dopaminergic-neuron_Dopamine_neurons 142 bp overlap
NANOG 7 datasets
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 111 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 183 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 127 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 85 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 183 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 169 bp overlap
ChIP hESC GSE18292.NANOG.hESC 115 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 121 bp overlap
Nr2e3 2 datasets
Motif DE_12h DE_12h-Nr2e3_MA0164.2 6 bp overlap
Motif ES_0h ES_0h-Nr2e3_MA0164.2 6 bp overlap
RAD21 26 datasets
ChIP GM12878 ENCFF046CBW 183 bp overlap
ChIP GM12878 ENCFF101UQZ 170 bp overlap
ChIP GM12878 ENCSR000BMY.RAD21.GM12878 152 bp overlap
ChIP GM12878 ENCSR000EAC.RAD21.GM12878 121 bp overlap
ChIP H1 ENCFF698EWO 183 bp overlap
ChIP H1 ENCFF967OJF 183 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 152 bp overlap
ChIP HEC-1-B_R1-insertion GSE140868.RAD21.HEC-1-B_R1-insertion 94 bp overlap
ChIP HEC-1-B_RF-insertion GSE140868.RAD21.HEC-1-B_RF-insertion 92 bp overlap
ChIP SK-N-SH ENCFF747MAS 183 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 183 bp overlap
ChIP SLK_Ctrl GSE138105.RAD21.SLK_Ctrl 183 bp overlap
ChIP THP-1_PMA_IFNb-6h GSE103477.RAD21.THP-1_PMA_IFNb-6h 140 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-000m-Flavo-000m 112 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-000m-Flavo-240m 183 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-020m-Flavo-000m 170 bp overlap
ChIP THP-1_Pam3csk-030m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-030m-Flavo-000m 183 bp overlap
ChIP THP-1_Pam3csk-120m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-120m-Flavo-000m 144 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.RAD21.THP-1_Pam3csk-150m-Flavo-030m 183 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-360m-Flavo-240m 183 bp overlap
ChIP THP-1_eGFP-IFNb GSE103477.RAD21.THP-1_eGFP-IFNb 183 bp overlap
ChIP THP-1_siWAPL-eGFP-Pam3csk-4h GSE103477.RAD21.THP-1_siWAPL-eGFP-Pam3csk-4h 132 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 182 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 176 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 181 bp overlap
ChIP neuroblastoma GSE115862.RAD21.neuroblastoma 183 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 142 bp overlap
SMARCA4 1 dataset
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 131 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 111 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 148 bp overlap
SMC1A-B 1 dataset
ChIP TC-32 GSE115250.SMC1A-B.TC-32 157 bp overlap
SMC3 8 datasets
ChIP GM12878 ENCFF085RLZ 183 bp overlap
ChIP HeLa GSE126990.SMC3.HeLa 180 bp overlap
ChIP HeLa-Kyoto GSE102884.SMC3.HeLa-Kyoto 180 bp overlap
ChIP HeLa-Kyoto GSE138405.SMC3.HeLa-Kyoto 180 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.SMC3.HeLa-Kyoto_PDS5-depleted 169 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.SMC3.HeLa-Kyoto_WAPL_PDS-depleted 183 bp overlap
ChIP HeLa-Kyoto_WT GSE138405.SMC3.HeLa-Kyoto_WT 183 bp overlap
ChIP SK-N-SH ENCFF791WFB 183 bp overlap
STAG1 4 datasets
ChIP CHRF28811 ERP008568.STAG1.CHRF28811 149 bp overlap
ChIP HeLa GSE126990.STAG1.HeLa 183 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 183 bp overlap
ChIP MCF-7 ERP000209.STAG1.MCF-7 129 bp overlap
STAG2 1 dataset
ChIP OCI-AML-3 GSE111537.STAG2.OCI-AML-3 93 bp overlap
TRIM22 1 dataset
ChIP GM12878 ENCSR637QAM.TRIM22.GM12878 164 bp overlap
ZBTB2 1 dataset
ChIP GM12878 GSE97661.ZBTB2.GM12878 153 bp overlap
ZNF143 1 dataset
ChIP WA01 ENCSR000EBW.ZNF143.WA01 133 bp overlap
ZNF16 2 datasets
Motif DE_12h DE_12h-ZNF16_MA1654.2 21 bp overlap
Motif ES_0h ES_0h-ZNF16_MA1654.2 21 bp overlap
Huangfu Lab · Publications · Resources · Contact