chr1 : 51,998,194 51,998,410
216 bp 17 TFs 1 linked gene
This 216 bp open chromatin element is linked to RAB3B and is bound by 17 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
RAB3B 7.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:51,993,194 – 52,003,410
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
17 transcription factors
Source
Cell type
BRD3 1 dataset
ChIP K-562_DMSO-IFNG GSE138084.BRD3.K-562_DMSO-IFNG 198 bp overlap
BRD4 1 dataset
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 90 bp overlap
CTCF 1 dataset
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 108 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 167 bp overlap
GATA3 1 dataset
ChIP Kelly GSE65664.GATA3.Kelly 115 bp overlap
GATA6 3 datasets
ChIP DE_D1 S41-DE-d1-GATA6-exp2 169 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 216 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 197 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 122 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 112 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 172 bp overlap
HDAC2 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 122 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 79 bp overlap
NEUROD1 1 dataset
ChIP D283-Med GSE92582.NEUROD1.D283-Med 106 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 180 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 182 bp overlap
SP1 1 dataset
ChIP HEK293 GSE76494.SP1.HEK293 190 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 199 bp overlap
ZNF18 2 datasets
ChIP HEK293 ENCFF066NGR 216 bp overlap
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 163 bp overlap