chr1 : 36,736,272 36,736,888
616 bp 32 TFs 4 linked genes
This 616 bp open chromatin element is linked to 4 target genes and is bound by 32 transcription factors.
Linked Genes
4 genes
Gene Expression Dist. to TSS Distance Link type
CSF3R 254.5 kb Distal Multiome
MRPS15 272.2 kb Distal Multiome
OSCP1 286.1 kb Distal Multiome
GRIK3 297.9 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:36,731,272 – 36,741,888
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
32 transcription factors
Source
Cell type
CREBBP 1 dataset
ChIP LS180_125 GSE39277.CREBBP.LS180_125 135 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 353 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 308 bp overlap
ETS1 2 datasets
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 245 bp overlap
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 128 bp overlap
EZH2 4 datasets
ChIP DND41 ENCSR000ASW.EZH2.DND41 284 bp overlap
ChIP HeLa-S3 ENCFF318LHU 610 bp overlap
ChIP PC-9 ENCSR793USK.EZH2.PC-9 212 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 590 bp overlap
FOXA1 6 datasets
ChIP LNCaP_GSK-48H GSE114266.FOXA1.LNCaP_GSK-48H 213 bp overlap
ChIP MCF-7-TAMR-1_4OH-Tam GSE75201.FOXA1.MCF-7-TAMR-1_4OH-Tam 124 bp overlap
ChIP MCF-7_E2 GSE59530.FOXA1.MCF-7_E2 125 bp overlap
ChIP MCF-7_JC4692 GSE126004.FOXA1.MCF-7_JC4692 181 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 163 bp overlap
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 267 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 607 bp overlap
ChIP DE DE-FOXA2-2 616 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 258 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 556 bp overlap
ChIP DE DE-GATA4-2 536 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 245 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 524 bp overlap
ChIP DE DE-GATA6-2 539 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 507 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 487 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 590 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 523 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 596 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 605 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 467 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 404 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 477 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 411 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 535 bp overlap
KDM1A 1 dataset
ChIP NB4_DMSO GSE128528.KDM1A.NB4_DMSO 120 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 137 bp overlap
PBX1 1 dataset
ChIP RCH-ACV GSE85988.PBX1.RCH-ACV 211 bp overlap
POU5F1 2 datasets
ChIP BG03 GSE21614.POU5F1.BG03 153 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 488 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 335 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 133 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 223 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 616 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 577 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 566 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 441 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 501 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 548 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 502 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 476 bp overlap
SMAD3 2 datasets
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 219 bp overlap
ChIP endoderm GSE29422.SMAD3.endoderm 227 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 260 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 344 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 451 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 223 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 269 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 420 bp overlap
SP8 1 dataset
Motif DE_72h DE_72h-SP8_MA0747.2 11 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 351 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 271 bp overlap
TCF3 1 dataset
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 174 bp overlap
Wt1 1 dataset
Motif DE_72h DE_72h-Wt1_MA1627.2 10 bp overlap