chr2 : 70,283,629 70,284,233
604 bp 27 TFs 7 linked genes
This 604 bp open chromatin element is linked to 7 target genes and is bound by 27 transcription factors.
Linked Genes
7 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
SNRPG 9.5 kb Proximal Proximity
FAM136A 18.2 kb Distal Multiome
PCYOX1 25.7 kb Distal Multiome
TIA1 35.2 kb Distal Multiome
C2orf42 35.3 kb Distal Multiome
PCBP1 196.4 kb Distal Multiome
PCBP1-AS1 196.9 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:70,278,629 – 70,289,233
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
27 transcription factors
Source
Cell type
BAZ2A 1 dataset
ChIP HepG2 ENCFF797RVO 604 bp overlap
BRD4 1 dataset
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 137 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 251 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 175 bp overlap
FOS 1 dataset
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 262 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 604 bp overlap
ChIP DE DE-FOXA2-2 604 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 593 bp overlap
ChIP DE DE-GATA4-2 604 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 604 bp overlap
ChIP DE DE-GATA6-2 604 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 604 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 543 bp overlap
HDAC2 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 120 bp overlap
KLF4 1 dataset
ChIP HAP1 GSE130417.KLF4.HAP1 56 bp overlap
POLR2A 4 datasets
ChIP A549 ENCFF748RAW 91 bp overlap
ChIP H1 ENCFF833NJP 411 bp overlap
ChIP K562 ENCFF262YXJ 268 bp overlap
ChIP K562 ENCFF262YXJ 319 bp overlap
POLR2G 1 dataset
ChIP HepG2 ENCFF241AEG 126 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 430 bp overlap
RAD21 1 dataset
ChIP HAP1 GSE152721.RAD21.HAP1 82 bp overlap
RBFOX2 10 datasets
ChIP HepG2 ENCFF554DMZ 411 bp overlap
ChIP HepG2 ENCFF939HTZ 424 bp overlap
ChIP K-562 ENCSR822LBD.RBFOX2.K-562 108 bp overlap
ChIP K-562 GSE120104.RBFOX2.K-562 108 bp overlap
ChIP K-562 GSE120104.RBFOX2.K-562 75 bp overlap
ChIP K562 ENCFF196WTG 102 bp overlap
ChIP K562 ENCFF196WTG 604 bp overlap
ChIP K562 ENCFF967GRF 94 bp overlap
ChIP K562 ENCFF967GRF 604 bp overlap
ChIP K562 ENCFF967GRF 399 bp overlap
RBM22 2 datasets
ChIP K-562 ENCSR848AOP.RBM22.K-562 53 bp overlap
ChIP K-562 GSE120104.RBM22.K-562 55 bp overlap
SMAD2-3 2 datasets
ChIP HGrC1_C134W-TGF GSE138496.SMAD2-3.HGrC1_C134W-TGF 120 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 604 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 593 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 510 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 156 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 139 bp overlap
SMAD5 2 datasets
ChIP K-562 ENCSR000FCD.SMAD5.K-562 141 bp overlap
ChIP K-562 ENCSR000FCD.SMAD5.K-562 252 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 604 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 604 bp overlap
SSRP1 1 dataset
ChIP HepG2 ENCFF540BLL 398 bp overlap