chr1 : 31,375,901 31,376,374
473 bp 20 TFs 5 linked genes
This 473 bp open chromatin element is linked to 5 target genes and is bound by 20 transcription factors.
Linked Genes
5 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
FABP3 2.8 kb Proximal Proximity
SERINC2 36.9 kb Distal Multiome
ZCCHC17 79.2 kb Distal Multiome
SNRNP40 79.5 kb Distal Multiome
PEF1 268.6 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:31,370,901 – 31,381,374
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
20 transcription factors
Source
Cell type
BRD4 1 dataset
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 321 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 85 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 417 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 142 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 146 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 473 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 346 bp overlap
ChIP DE DE-GATA4-2 444 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 340 bp overlap
ChIP DE DE-GATA6-2 473 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 311 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 224 bp overlap
JUN 1 dataset
ChIP 786-O GSE86092.JUN.786-O 177 bp overlap
KLF1 2 datasets
ChIP HEK293 ENCFF159QSW 326 bp overlap
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 301 bp overlap
KLF17 1 dataset
ChIP HEK293 ENCSR065WUF.KLF17.HEK293 386 bp overlap
MAX 3 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 321 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 289 bp overlap
ChIP WTC11 ENCFF223QFY 473 bp overlap
MXI1 1 dataset
ChIP neural ENCSR934NHU.MXI1.neural 178 bp overlap
MYC 2 datasets
ChIP NCI-H128 GSE41105.MYC.NCI-H128 155 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 295 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 228 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 259 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 259 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 445 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 270 bp overlap
ZNF770 5 datasets
ChIP HEK293 ENCFF468FCG 295 bp overlap
ChIP HEK293 ENCSR242BGR.ZNF770.HEK293 232 bp overlap
ChIP Hep-G2 ENCSR510GKB.ZNF770.Hep-G2 306 bp overlap
ChIP HepG2 ENCFF233UVH 364 bp overlap
ChIP HepG2 ENCFF233UVH 473 bp overlap