chrX : 10,159,942 – 10,160,198
256 bp 21 TFs 1 linked gene
This 256 bp open chromatin element is linked to CLCN4 and is bound by 21 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
CLCN4 3.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:10,154,942 – 10,165,198
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
21 transcription factors
Source
Cell type
AR 1 dataset
ChIP MCF-7 ERP001226.AR.MCF-7 94 bp overlap
ARID2 1 dataset
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.ARID2.MCF-7_parental_4-hydroxytamoxifen 141 bp overlap
BRD4 1 dataset
ChIP CLL_patient2_4h_CpG GSE109411.BRD4.CLL_patient2_4h_CpG 169 bp overlap
EP300 1 dataset
ChIP MCF-7 GSE128445.EP300.MCF-7 254 bp overlap
ESR1 97 datasets
ChIP MCF-7 ENCFF004AKH 142 bp overlap
ChIP MCF-7 GSE45822.ESR1.MCF-7 256 bp overlap
ChIP MCF-7 GSE117492.ESR1.MCF-7 256 bp overlap
ChIP MCF-7 GSE148277.ESR1.MCF-7 256 bp overlap
ChIP MCF-7 GSE128445.ESR1.MCF-7 256 bp overlap
ChIP MCF-7 GSE41561.ESR1.MCF-7 94 bp overlap
ChIP MCF-7 GSE68355.ESR1.MCF-7 185 bp overlap
ChIP MCF-7 GSE76893.ESR1.MCF-7 242 bp overlap
ChIP MCF-7 GSE103023.ESR1.MCF-7 164 bp overlap
ChIP MCF-7-Luc_E2 GSE78284.ESR1.MCF-7-Luc_E2 158 bp overlap
ChIP MCF-7_4OH-Tam GSE117941.ESR1.MCF-7_4OH-Tam 118 bp overlap
ChIP MCF-7_ARID1A-KO GSE123284.ESR1.MCF-7_ARID1A-KO 174 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT GSE123284.ESR1.MCF-7_ARID1A-KO_4-OHT 256 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT_clone14 GSE123284.ESR1.MCF-7_ARID1A-KO_4-OHT_clone14 256 bp overlap
ChIP MCF-7_ARID1A-KO_clone14 GSE123284.ESR1.MCF-7_ARID1A-KO_clone14 249 bp overlap
ChIP MCF-7_AZD2014 GSE103023.ESR1.MCF-7_AZD2014 132 bp overlap
ChIP MCF-7_D538G GSE148277.ESR1.MCF-7_D538G 243 bp overlap
ChIP MCF-7_D538G_DMSO GSE148277.ESR1.MCF-7_D538G_DMSO 252 bp overlap
ChIP MCF-7_DMSO GSE125594.ESR1.MCF-7_DMSO 256 bp overlap
ChIP MCF-7_E2 GSE81510.ESR1.MCF-7_E2 243 bp overlap
ChIP MCF-7_E2 GSE60270.ESR1.MCF-7_E2 256 bp overlap
ChIP MCF-7_E2 GSE73956.ESR1.MCF-7_E2 256 bp overlap
ChIP MCF-7_E2 GSE71276.ESR1.MCF-7_E2 221 bp overlap
ChIP MCF-7_E2 GSE59530.ESR1.MCF-7_E2 256 bp overlap
ChIP MCF-7_E2 GSE86538.ESR1.MCF-7_E2 221 bp overlap
ChIP MCF-7_E2 GSE108883.ESR1.MCF-7_E2 216 bp overlap
ChIP MCF-7_E2 ERP000209.ESR1.MCF-7_E2 148 bp overlap
ChIP MCF-7_E2 GSE14664.ESR1.MCF-7_E2 140 bp overlap
ChIP MCF-7_E2 ERP000901.ESR1.MCF-7_E2 113 bp overlap
ChIP MCF-7_E2 ERP000380.ESR1.MCF-7_E2 109 bp overlap
ChIP MCF-7_E2-10min-ERalpha GSE94023.ESR1.MCF-7_E2-10min-ERalpha 175 bp overlap
ChIP MCF-7_E2-20min-ERalpha GSE94023.ESR1.MCF-7_E2-20min-ERalpha 170 bp overlap
ChIP MCF-7_E2-320min-ERalpha GSE94023.ESR1.MCF-7_E2-320min-ERalpha 78 bp overlap
ChIP MCF-7_E2-40min-ERalpha GSE94023.ESR1.MCF-7_E2-40min-ERalpha 171 bp overlap
ChIP MCF-7_E2-5min-ERalpha GSE94023.ESR1.MCF-7_E2-5min-ERalpha 161 bp overlap
ChIP MCF-7_E2-80min-ERalpha GSE94023.ESR1.MCF-7_E2-80min-ERalpha 160 bp overlap
ChIP MCF-7_E2_30min GSE108883.ESR1.MCF-7_E2_30min 154 bp overlap
ChIP MCF-7_E2_40M GSE54855.ESR1.MCF-7_E2_40M 135 bp overlap
ChIP MCF-7_E2_45m GSE67295.ESR1.MCF-7_E2_45m 256 bp overlap
ChIP MCF-7_E2_45min GSE109820.ESR1.MCF-7_E2_45min 179 bp overlap
ChIP MCF-7_E2_90min GSE109820.ESR1.MCF-7_E2_90min 151 bp overlap
ChIP MCF-7_E2_Dex GSE81510.ESR1.MCF-7_E2_Dex 176 bp overlap
ChIP MCF-7_E2_TNF GSE59530.ESR1.MCF-7_E2_TNF 256 bp overlap
ChIP MCF-7_ESR1_wildtype GSE100074.ESR1.MCF-7_ESR1_wildtype 256 bp overlap
ChIP MCF-7_G6274 GSE117941.ESR1.MCF-7_G6274 240 bp overlap
ChIP MCF-7_GLYC ERP002305.ESR1.MCF-7_GLYC 149 bp overlap
ChIP MCF-7_HC11 GSE102882.ESR1.MCF-7_HC11 163 bp overlap
ChIP MCF-7_LTED_E2 GSE86538.ESR1.MCF-7_LTED_E2 241 bp overlap
ChIP MCF-7_LY2_ETOH GSE54592.ESR1.MCF-7_LY2_ETOH 256 bp overlap
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 251 bp overlap
ChIP MCF-7_R5020 GSE68355.ESR1.MCF-7_R5020 231 bp overlap
ChIP MCF-7_RAD001 GSE103023.ESR1.MCF-7_RAD001 195 bp overlap
ChIP MCF-7_SHCRT_E2 ERP000380.ESR1.MCF-7_SHCRT_E2 166 bp overlap
ChIP MCF-7_SHCTR_E2 GSE60270.ESR1.MCF-7_SHCTR_E2 154 bp overlap
ChIP MCF-7_SHCTR_E2_TNF GSE59530.ESR1.MCF-7_SHCTR_E2_TNF 256 bp overlap
ChIP MCF-7_SHFOXA1_E2 ERP000380.ESR1.MCF-7_SHFOXA1_E2 84 bp overlap
ChIP MCF-7_SHFOXA1_E2_TNF GSE59530.ESR1.MCF-7_SHFOXA1_E2_TNF 256 bp overlap
ChIP MCF-7_SICTR_E2 GSE40129.ESR1.MCF-7_SICTR_E2 93 bp overlap
ChIP MCF-7_SIGATA_E2 GSE40129.ESR1.MCF-7_SIGATA_E2 113 bp overlap
ChIP MCF-7_TAM ERP000380.ESR1.MCF-7_TAM 143 bp overlap
ChIP MCF-7_TAMR GSE86538.ESR1.MCF-7_TAMR 137 bp overlap
ChIP MCF-7_TNFa_45m GSE67295.ESR1.MCF-7_TNFa_45m 180 bp overlap
ChIP MCF-7_TamR GSE128445.ESR1.MCF-7_TamR 191 bp overlap
ChIP MCF-7_Tamoxifen GSE102410.ESR1.MCF-7_Tamoxifen 129 bp overlap
ChIP MCF-7_Tamoxifen GSE115607.ESR1.MCF-7_Tamoxifen 182 bp overlap
ChIP MCF-7_WT GSE136302.ESR1.MCF-7_WT 107 bp overlap
ChIP MCF-7_estradiol-DHT_4h GSE99626.ESR1.MCF-7_estradiol-DHT_4h 142 bp overlap
ChIP MCF-7_estradiol-Dex_75min GSE99626.ESR1.MCF-7_estradiol-Dex_75min 81 bp overlap
ChIP MCF-7_jc5849 GSE126004.ESR1.MCF-7_jc5849 229 bp overlap
ChIP MCF-7_jc5850 GSE126004.ESR1.MCF-7_jc5850 190 bp overlap
ChIP MCF-7_jc5855 GSE126004.ESR1.MCF-7_jc5855 223 bp overlap
ChIP MCF-7_oeCtrl GSE128445.ESR1.MCF-7_oeCtrl 145 bp overlap
ChIP MCF-7_parental GSE123284.ESR1.MCF-7_parental 109 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.ESR1.MCF-7_parental_4-hydroxytamoxifen 256 bp overlap
ChIP MCF-7_s5942 GSE115607.ESR1.MCF-7_s5942 126 bp overlap
ChIP MCF-7_shCtrl GSE125594.ESR1.MCF-7_shCtrl 245 bp overlap
ChIP MCF-7_shFbxo_E2_4OHT GSE119702.ESR1.MCF-7_shFbxo_E2_4OHT 109 bp overlap
ChIP MCF-7_shFbxo_OHT GSE119702.ESR1.MCF-7_shFbxo_OHT 109 bp overlap
ChIP MCF-7_shTEAD4 GSE125594.ESR1.MCF-7_shTEAD4 256 bp overlap
ChIP MCF-7_shYAP1 GSE125594.ESR1.MCF-7_shYAP1 256 bp overlap
ChIP MDA-MB-231_45min GSE95121.ESR1.MDA-MB-231_45min 239 bp overlap
ChIP MDA-MB-231_LQ_45min GSE95121.ESR1.MDA-MB-231_LQ_45min 239 bp overlap
ChIP T-47D GSE148277.ESR1.T-47D 219 bp overlap
ChIP T-47D ENCSR000BKN.ESR1.T-47D 94 bp overlap
ChIP T-47D GSE74033.ESR1.T-47D 131 bp overlap
ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 256 bp overlap
ChIP T-47D_E2 GSE125594.ESR1.T-47D_E2 210 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 254 bp overlap
ChIP T-47D_siCont-IL6 GSE126004.ESR1.T-47D_siCont-IL6 183 bp overlap
ChIP T-47D_siCont-Veh GSE126004.ESR1.T-47D_siCont-Veh 158 bp overlap
ChIP T-47D_siFOXA1-IL6 GSE126004.ESR1.T-47D_siFOXA1-IL6 231 bp overlap
ChIP T-47D_siFOXA1-Veh GSE126004.ESR1.T-47D_siFOXA1-Veh 232 bp overlap
ChIP U2OS_100nM-E2 GSE151039.ESR1.U2OS_100nM-E2 180 bp overlap
ChIP U2OS_10nM-E2 GSE151039.ESR1.U2OS_10nM-E2 218 bp overlap
ChIP U2OS_10nM-E2-B GSE151039.ESR1.U2OS_10nM-E2-B 199 bp overlap
ChIP U2OS_E2 GSE26110.ESR1.U2OS_E2 233 bp overlap
ChIP pleural-effusion GSE86538.ESR1.pleural-effusion 72 bp overlap
ESR1_D538G 1 dataset
ChIP MCF-7_dox_E2 GSE94493.ESR1_D538G.MCF-7_dox_E2 145 bp overlap
ESR1_PCDH11X 1 dataset
ChIP T-47D GSE116170.ESR1_PCDH11X.T-47D 210 bp overlap
ESR1_Y537N 2 datasets
ChIP MCF-7_dox GSE94493.ESR1_Y537N.MCF-7_dox 226 bp overlap
ChIP MCF-7_dox_E2 GSE94493.ESR1_Y537N.MCF-7_dox_E2 150 bp overlap
ESR1_Y537S 5 datasets
ChIP MCF-7_E2 GSE94493.ESR1_Y537S.MCF-7_E2 225 bp overlap
ChIP MCF-7_dox GSE94493.ESR1_Y537S.MCF-7_dox 188 bp overlap
ChIP T-47D_E2 GSE94493.ESR1_Y537S.T-47D_E2 137 bp overlap
ChIP T-47D_dox GSE94493.ESR1_Y537S.T-47D_dox 120 bp overlap
ChIP T-47D_dox_E2 GSE94493.ESR1_Y537S.T-47D_dox_E2 155 bp overlap
ESR1_pS118 1 dataset
ChIP MCF-7_E2_sc GSE117569.ESR1_pS118.MCF-7_E2_sc 225 bp overlap
ESR2 2 datasets
ChIP MDA-MB-231_LY500307 GSE108979.ESR2.MDA-MB-231_LY500307 224 bp overlap
ChIP MDA-MB-231_estradiol GSE108979.ESR2.MDA-MB-231_estradiol 256 bp overlap
FOXA1 2 datasets
ChIP MCF-7_E2 GSE59530.FOXA1.MCF-7_E2 82 bp overlap
ChIP MCF-7_E2_TNF GSE59530.FOXA1.MCF-7_E2_TNF 159 bp overlap
GATA6 5 datasets
ChIP DE_D1 S14-DE-d1-GATA6-exp1 256 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 144 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 256 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 256 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 144 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 169 bp overlap
MED1 1 dataset
ChIP MDA-MB-231_LQ_45min GSE95121.MED1.MDA-MB-231_LQ_45min 256 bp overlap
NRIP1 1 dataset
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 78 bp overlap
RELA 1 dataset
ChIP MCF-7_Veh GSE67295.RELA.MCF-7_Veh 226 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 256 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 256 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 222 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 256 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 175 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 256 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 256 bp overlap
SRC 2 datasets
ChIP MDA-MB-231_45min GSE95121.SRC.MDA-MB-231_45min 192 bp overlap
ChIP MDA-MB-231_LQ_45min GSE95121.SRC.MDA-MB-231_LQ_45min 256 bp overlap
YY1AP1 1 dataset
ChIP MCF-7_E2 GSE125594.YY1AP1.MCF-7_E2 207 bp overlap
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