chr19:35,471,034–35,471,539

chr19 : 35,471,034 – 35,471,539

505 bp 15 TFs 13 linked genes

This 505 bp open chromatin element is linked to 13 target genes and is bound by 15 transcription factors.

Linked Genes

13 genes

Gene	Expression	Dist. to TSS	Distance	Link type
DMKN		39.2 kb	Distal	Multiome
TMEM147		74.3 kb	Distal	Multiome
HAUS5		141.5 kb	Distal	Multiome
RBM42		157.8 kb	Distal	Multiome
COX6B1		177.0 kb	Distal	Multiome
UPK1A		195.2 kb	Distal	Multiome
UPK1A-AS1		202.0 kb	Distal	Multiome
USF2		202.3 kb	Distal	Multiome
LSR		222.3 kb	Distal	Multiome
KMT2B		246.7 kb	Distal	Multiome
PSENEN		274.3 kb	Distal	Multiome
LIN37		277.1 kb	Distal	Multiome
PROSER3		286.9 kb	Distal	Multiome

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

15 transcription factors

Cebpa 1 dataset

ChIP BLaER1 ENCFF031ISE 132 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 505 bp overlap

ChIP DE DE-FOXA2-2 505 bp overlap

GATA4 2 datasets

ChIP DE DE-GATA4-1 410 bp overlap

ChIP DE DE-GATA4-2 505 bp overlap

GATA6 8 datasets

ChIP DE DE-GATA6-1 409 bp overlap

ChIP DE DE-GATA6-2 466 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 275 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 331 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 375 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 364 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 228 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 223 bp overlap

ChIP DE_D1 S40-DE-d1-JUN-exp2 280 bp overlap

ChIP DE_D2 S02-DE-d2-JUN-exp1 505 bp overlap

ChIP DE_D2 S54-DE-d2-JUN-exp2 351 bp overlap

NANOG 3 datasets

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 505 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 127 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 140 bp overlap

POU5F1 4 datasets

ChIP DE_D1 DED1-OCT4_Batch_II 331 bp overlap

ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 101 bp overlap

ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 177 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 202 bp overlap

SMAD2 1 dataset

ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 283 bp overlap

SMAD2-3 3 datasets

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 505 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 390 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 385 bp overlap

SMAD2_3 5 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 505 bp overlap

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 505 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 505 bp overlap

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 505 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 468 bp overlap

SMARCA4 1 dataset

ChIP hiPSC GSE124903.SMARCA4.hiPSC 53 bp overlap

SMARCC1 1 dataset

ChIP DE_D1 S15-DE-d1-BAF155-exp1 110 bp overlap

SOX17 1 dataset

ChIP DE_D2 DED2-SOX17_Batch_II 309 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 414 bp overlap

ZBTB17 1 dataset

ChIP HEK293 ENCFF865LIO 332 bp overlap