chr18 : 7,277,535 7,278,327
792 bp 30 TFs 2 linked genes
This 792 bp open chromatin element is linked to LAMA1 and PTPRM and is bound by 30 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
LAMA1 160.2 kb Distal Multiome
PTPRM 289.4 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr18:7,272,535 – 7,283,327
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
30 transcription factors
Source
Cell type
AR 2 datasets
ChIP LNCaP GSE80256.AR.LNCaP 228 bp overlap
ChIP MCF-7 GSE48930.AR.MCF-7 155 bp overlap
BRD4 1 dataset
ChIP NMC24335 GSE96775.BRD4.NMC24335 201 bp overlap
Crx 1 dataset
Motif DE_60h DE_60h-Crx_MA0467.3 6 bp overlap
DUX4 1 dataset
Motif DE_60h DE_60h-DUX4_MA0468.1 11 bp overlap
Dmbx1 1 dataset
Motif DE_60h DE_60h-Dmbx1_MA0883.2 10 bp overlap
Dux 1 dataset
Motif DE_60h DE_60h-Dux_MA0611.3 11 bp overlap
EOMES 2 datasets
ChIP hESC GSE26097.EOMES.hESC 188 bp overlap
ChIP hESC GSE26097.EOMES.hESC 262 bp overlap
ESR1 2 datasets
ChIP MCF-7_Veh_OA GSE93510.ESR1.MCF-7_Veh_OA 306 bp overlap
ChIP U2OS_E2 GSE26110.ESR1.U2OS_E2 54 bp overlap
EZH2 1 dataset
ChIP THP-1 GSE135024.EZH2.THP-1 215 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 339 bp overlap
ChIP DE DE-FOXA2-2 268 bp overlap
ChIP DE DE-FOXA2-2 356 bp overlap
GATA1 1 dataset
Motif DE_60h DE_60h-GATA1_MA0035.5 7 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 786 bp overlap
ChIP DE DE-GATA4-2 792 bp overlap
ChIP foregut GSE117136.GATA4.foregut 381 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 428 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 792 bp overlap
ChIP DE DE-GATA6-2 792 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 310 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 792 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 407 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 792 bp overlap
ChIP foregut GSE117136.GATA6.foregut 584 bp overlap
GSC 1 dataset
Motif DE_60h DE_60h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_60h DE_60h-GSC2_MA0891.2 6 bp overlap
MEIS1 1 dataset
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
NELFE 1 dataset
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 162 bp overlap
NUTM1 1 dataset
ChIP NMC24335 GSE96775.NUTM1.NMC24335 366 bp overlap
OTX1 1 dataset
Motif DE_60h DE_60h-OTX1_MA0711.2 6 bp overlap
PITX1 1 dataset
Motif DE_60h DE_60h-PITX1_MA0682.3 6 bp overlap
PITX3 1 dataset
Motif DE_60h DE_60h-PITX3_MA0714.2 6 bp overlap
RHOXF1 1 dataset
Motif DE_60h DE_60h-RHOXF1_MA0719.2 6 bp overlap
RUNX2 1 dataset
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 100 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 335 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 363 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 742 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 782 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 193 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 295 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 792 bp overlap
SOX8 1 dataset
ChIP RH4_DMSO-6H GSE116344.SOX8.RH4_DMSO-6H 189 bp overlap
ZNF532 1 dataset
ChIP NMC24335 GSE96775.ZNF532.NMC24335 581 bp overlap