chr1 : 221,965,763 221,966,471
708 bp 27 TFs 2 linked genes
This 708 bp open chromatin element is linked to LINC02474 and DUSP10 and is bound by 27 transcription factors.
Linked Genes
2 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
LINC02474 at TSS At TSS Proximity
DUSP10 224.1 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:221,960,763 – 221,971,471
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
27 transcription factors
Source
Cell type
BRD2 3 datasets
ChIP SUM149PT_DMSO GSE131097.BRD2.SUM149PT_DMSO 267 bp overlap
ChIP SUM149PT_JQ1 GSE131097.BRD2.SUM149PT_JQ1 226 bp overlap
ChIP SUM149PT_R_DMSO GSE131097.BRD2.SUM149PT_R_DMSO 284 bp overlap
BRD3 1 dataset
ChIP H-1_DE GSE126661.BRD3.H-1_DE 115 bp overlap
BRD4 9 datasets
ChIP HCC1937 GSE124748.BRD4.HCC1937 193 bp overlap
ChIP PC-3_GDC-R GSE137207.BRD4.PC-3_GDC-R 147 bp overlap
ChIP PC-3_GDC-R_SAHA GSE137207.BRD4.PC-3_GDC-R_SAHA 66 bp overlap
ChIP SUM149PT_DMSO GSE131097.BRD4.SUM149PT_DMSO 276 bp overlap
ChIP SUM149_DMSO GSE63581.BRD4.SUM149_DMSO 282 bp overlap
ChIP SUM159PT_DMSO_24h GSE87418.BRD4.SUM159PT_DMSO_24h 53 bp overlap
ChIP SUM229PE_neg_30nMtrametinib_24h GSE87418.BRD4.SUM229PE_neg_30nMtrametinib_24h 234 bp overlap
ChIP SUM229PE_neg_DMSO_24h GSE87418.BRD4.SUM229PE_neg_DMSO_24h 184 bp overlap
ChIP SUM229PE_pos_30nMtrametinib_24h GSE87418.BRD4.SUM229PE_pos_30nMtrametinib_24h 65 bp overlap
ELF3 1 dataset
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 99 bp overlap
EP300 1 dataset
ChIP PC-3 GSE147455.EP300.PC-3 95 bp overlap
FOS 1 dataset
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 68 bp overlap
FOXA1 1 dataset
ChIP LS180 GSE140533.FOXA1.LS180 56 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 391 bp overlap
ChIP DE DE-GATA4-2 555 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-2 510 bp overlap
ChIP OACP4-C GSE132680.GATA6.OACP4-C 202 bp overlap
HDAC1 1 dataset
ChIP PC-3_GDC-resist GSE147455.HDAC1.PC-3_GDC-resist 97 bp overlap
HDAC2 2 datasets
ChIP PC-3 GSE147455.HDAC2.PC-3 68 bp overlap
ChIP PC-3_GDC-resist GSE147455.HDAC2.PC-3_GDC-resist 117 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 393 bp overlap
MGA 1 dataset
ChIP A-549_MGA-OE GSE112188.MGA.A-549_MGA-OE 65 bp overlap
NANOG 2 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 345 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 311 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 432 bp overlap
RAD21 1 dataset
ChIP A549 ENCFF264AHX 111 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 393 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 275 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 205 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 296 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 355 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 388 bp overlap
SMAD3 3 datasets
ChIP NCI-H441 GSE51509.SMAD3.NCI-H441 156 bp overlap
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 127 bp overlap
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 158 bp overlap
SMARCA4 2 datasets
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 65 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 176 bp overlap
SNAI2 1 dataset
ChIP PC-9_2DF GSE131687.SNAI2.PC-9_2DF 54 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 422 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 270 bp overlap
SUPT5H 2 datasets
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 238 bp overlap
ChIP DLD-1_NELFCD-AID_treated GSE144786.SUPT5H.DLD-1_NELFCD-AID_treated 162 bp overlap
TBX21 2 datasets
ChIP GM12878 ENCFF951HUW 266 bp overlap
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 144 bp overlap
TP63 1 dataset
ChIP keratinocyte GSE33571.TP63.keratinocyte 134 bp overlap