chr13 : 48,592,097 48,592,322
225 bp 26 TFs 1 linked gene
This 225 bp open chromatin element is linked to LINC00462 and is bound by 26 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LINC00462 1.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:48,587,097 – 48,597,322
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
26 transcription factors
Source
Cell type
ARID1A 2 datasets
ChIP RMG-I GSE120058.ARID1A.RMG-I 225 bp overlap
ChIP RMG-I GSE104545.ARID1A.RMG-I 225 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 225 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 91 bp overlap
CREB1 2 datasets
ChIP HepG2 ENCFF576ERP 100 bp overlap
ChIP HepG2 ENCFF576ERP 225 bp overlap
FOXA1 1 dataset
ChIP LS180 GSE140533.FOXA1.LS180 109 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 225 bp overlap
ChIP DE DE-FOXA2-2 225 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 225 bp overlap
ChIP DE DE-GATA4-2 225 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 127 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 210 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 225 bp overlap
ChIP DE DE-GATA6-2 225 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 225 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 225 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 225 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 225 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 179 bp overlap
ChIP KATO-III GSE51705.GATA6.KATO-III 128 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 199 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 140 bp overlap
HNF4A 1 dataset
ChIP KATO-III GSE114018.HNF4A.KATO-III 130 bp overlap
JRK 1 dataset
ChIP HepG2 ENCFF350YLO 114 bp overlap
JUN 2 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 224 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 105 bp overlap
KLF5 1 dataset
ChIP KATO-III GSE51705.KLF5.KATO-III 86 bp overlap
MITF 1 dataset
ChIP 501-mel GSE137522.MITF.501-mel 60 bp overlap
NANOG 5 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 205 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 128 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 225 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 225 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 171 bp overlap
NCAPH2 1 dataset
ChIP RMG-I_ARID1A-KO GSE120058.NCAPH2.RMG-I_ARID1A-KO 225 bp overlap
NEUROD1 3 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 220 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 186 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 174 bp overlap
ONECUT1 4 datasets
ChIP H9 ERP004206.ONECUT1.H9 153 bp overlap
ChIP Hep-G2 ENCSR956OSX.ONECUT1.Hep-G2 199 bp overlap
ChIP HepG2 ENCFF243FIR 86 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 225 bp overlap
ONECUT2 2 datasets
ChIP AGS_Overexpression GSE113045.ONECUT2.AGS_Overexpression 131 bp overlap
ChIP HepG2 ENCFF460COO 143 bp overlap
POU5F1 2 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 143 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 87 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 225 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 225 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 225 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 225 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 225 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 225 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 225 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 225 bp overlap
SMYD3 1 dataset
ChIP HepG2 ENCFF612TNJ 119 bp overlap
ZBTB24 1 dataset
ChIP HCT-116 GSE111683.ZBTB24.HCT-116 97 bp overlap
ZFX 1 dataset
ChIP HepG2 ENCFF016NZF 225 bp overlap
ZNF652 2 datasets
ChIP Hep-G2 ENCSR502GAX.ZNF652.Hep-G2 151 bp overlap
ChIP HepG2 ENCFF331VPZ 90 bp overlap