chr13 : 29,941,030 29,941,549
519 bp 18 TFs 1 linked gene
This 519 bp open chromatin element is linked to LINC00544 and is bound by 18 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LINC00544 5.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:29,936,030 – 29,946,549
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
18 transcription factors
Source
Cell type
CEBPA 1 dataset
ChIP T-47D_progesterone GSE132649.CEBPA.T-47D_progesterone 211 bp overlap
CEBPB 3 datasets
ChIP K-562 ENCSR000EHE.CEBPB.K-562 115 bp overlap
ChIP MCF-7 ENCFF772ZTQ 277 bp overlap
ChIP MCF-7 ENCSR000BSR.CEBPB.MCF-7 166 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 193 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 274 bp overlap
EZH2 1 dataset
ChIP DND41 ENCSR000ASW.EZH2.DND41 93 bp overlap
GATA3 2 datasets
ChIP MCF-7 ENCFF352QVM 352 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 224 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 303 bp overlap
ChIP DE DE-GATA4-2 514 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 253 bp overlap
ChIP DE DE-GATA6-2 506 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 398 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 519 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 485 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 519 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 519 bp overlap
HNF4A 2 datasets
ChIP liver ENCFF354NRH 67 bp overlap
ChIP liver ENCFF449HPV 81 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 368 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 330 bp overlap
REST 1 dataset
ChIP liver ENCFF240FWT 128 bp overlap
RXRA 1 dataset
ChIP liver ENCFF077DAP 135 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 519 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 507 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 216 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 515 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 263 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 352 bp overlap
SP1 1 dataset
ChIP liver ENCFF769YSM 58 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 391 bp overlap