chr12 : 93,683,540 93,683,709
169 bp 22 TFs 1 linked gene
This 169 bp open chromatin element is linked to CRADD and is bound by 22 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
CRADD 6.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:93,678,540 – 93,688,709
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
22 transcription factors
Source
Cell type
BRD2 1 dataset
ChIP HUVEC-C GSE60171.BRD2.HUVEC-C 130 bp overlap
BRD4 1 dataset
ChIP HAP1 GSE108387.BRD4.HAP1 162 bp overlap
CHD8 1 dataset
ChIP T-47D_ETOH_45 GSE62428.CHD8.T-47D_ETOH_45 169 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 104 bp overlap
CTCF 58 datasets
ChIP A-549 ENCSR000DPF.CTCF.A-549 122 bp overlap
ChIP BC-3 GSE135740.CTCF.BC-3 78 bp overlap
ChIP Caco-2 ENCFF753NZV 169 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 102 bp overlap
ChIP GM23338 ENCFF531QOI 169 bp overlap
ChIP GM23338 ENCFF772DML 169 bp overlap
ChIP H1 ENCFF230QSV 130 bp overlap
ChIP H1 ENCFF764RHO 169 bp overlap
ChIP H9 ENCFF152GTF 167 bp overlap
ChIP H9 ENCFF152GTF 62 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 169 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.CTCF.HCT-116_RAD21-mAC 166 bp overlap
ChIP HCT116 ENCFF003KHP 169 bp overlap
ChIP HEK293 ENCFF498RMM 169 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 119 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL_PDS-depleted 105 bp overlap
ChIP K-562 GSE110681.CTCF.K-562 121 bp overlap
ChIP K-562 GSE70482.CTCF.K-562 100 bp overlap
ChIP K-562 ENCSR000DMA.CTCF.K-562 89 bp overlap
ChIP K-562_5635 GSE131349.CTCF.K-562_5635 107 bp overlap
ChIP K-562_RF2-mutation GSE140868.CTCF.K-562_RF2-mutation 100 bp overlap
ChIP K562 ENCFF430KTH 169 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 102 bp overlap
ChIP Loucy ENCFF359TVQ 169 bp overlap
ChIP Loucy ENCFF359TVQ 57 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 169 bp overlap
ChIP MCF-7 ENCFF198DQX 164 bp overlap
ChIP MCF-7 ENCFF414SZG 141 bp overlap
ChIP MCF-7 ENCFF424NQR 154 bp overlap
ChIP MCF-7 ENCFF494VXA 164 bp overlap
ChIP MCF-7 ENCFF844STM 154 bp overlap
ChIP MCF-7 ENCFF954TUV 169 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 141 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 131 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 96 bp overlap
ChIP T-47D_NaCl-triptolide GSE111923.CTCF.T-47D_NaCl-triptolide 169 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 129 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 100 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 138 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 169 bp overlap
ChIP endodermal cell ENCFF471YCZ 169 bp overlap
ChIP gastrocnemius-medialis ENCSR428BKN.CTCF.gastrocnemius-medialis 169 bp overlap
ChIP gastrocnemius-medialis ENCSR355ALW.CTCF.gastrocnemius-medialis 147 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 101 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 169 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 169 bp overlap
ChIP heart ENCSR778ZPK.CTCF.heart 169 bp overlap
ChIP heart_left-ventricle ENCSR544APK.CTCF.heart_left-ventricle 169 bp overlap
ChIP heart_left-ventricle ENCSR718SDR.CTCF.heart_left-ventricle 167 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 114 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 154 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 136 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 132 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 156 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 169 bp overlap
ChIP islet ERP004003.CTCF.islet 91 bp overlap
ChIP parathyroid adenoma ENCFF173NJK 102 bp overlap
ChIP psoas muscle ENCFF305ZVF 169 bp overlap
ESR1 2 datasets
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 169 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 100 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR197ALX.HDGF.K-562 169 bp overlap
KMT2A 1 dataset
ChIP KOPN-8 GSE83671.KMT2A.KOPN-8 165 bp overlap
MED1 1 dataset
ChIP MCF-7_SHRARS GSE60270.MED1.MCF-7_SHRARS 99 bp overlap
MEN1 1 dataset
ChIP MOLM-13 GSE149183.MEN1.MOLM-13 169 bp overlap
PGR 1 dataset
ChIP myometrium_NP2 GSE137550.PGR.myometrium_NP2 142 bp overlap
RAD21 9 datasets
ChIP H1 ENCFF698EWO 169 bp overlap
ChIP H1 ENCFF967OJF 158 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 162 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 161 bp overlap
ChIP hiPSC_CVI GSE106870.RAD21.hiPSC_CVI 127 bp overlap
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 146 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 141 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.RAD21.hiPSC_failed-genome-editing 169 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 157 bp overlap
RBFOX2 1 dataset
ChIP K562 ENCFF967GRF 58 bp overlap
SCRT1 1 dataset
Motif DE_12h DE_12h-SCRT1_MA0743.3 10 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 156 bp overlap
SPIB 1 dataset
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
Spi1 1 dataset
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
TBL1X 1 dataset
ChIP HEK293T GSE35197.TBL1X.HEK293T 169 bp overlap
TFDP1 1 dataset
ChIP K562 ENCFF794ZXJ 152 bp overlap
ZBTB6 1 dataset
Motif DE_12h DE_12h-ZBTB6_MA1581.2 9 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCFF784SLD 151 bp overlap