chr1 : 211,681,537 211,681,820
283 bp 22 TFs 2 linked genes
This 283 bp open chromatin element is linked to NEK2-DT and NEK2 and is bound by 22 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
NEK2-DT 5.8 kb Proximal Proximity
NEK2 5.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:211,676,537 – 211,686,820
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
22 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 88 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 76 bp overlap
CREB5 1 dataset
ChIP LNCaP GSE137775.CREB5.LNCaP 160 bp overlap
CTCF 2 datasets
ChIP Loucy ENCFF359TVQ 55 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 240 bp overlap
E2F8 1 dataset
ChIP GM12878 ENCSR793HVL.E2F8.GM12878 76 bp overlap
ESR1 2 datasets
ChIP MCF-7_SHCTR_E2_TNF GSE59530.ESR1.MCF-7_SHCTR_E2_TNF 102 bp overlap
ChIP MCF-7_TNFa_45m GSE67295.ESR1.MCF-7_TNFa_45m 99 bp overlap
ETV2 1 dataset
ChIP induced-endothelial-cell_Veh GSE123906.ETV2.induced-endothelial-cell_Veh 141 bp overlap
FOXA1 1 dataset
ChIP LNCaP_TFS GSE123618.FOXA1.LNCaP_TFS 57 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 179 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 242 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 264 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 204 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 123 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 184 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 140 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 79 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 251 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 238 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 97 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 65 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 53 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 250 bp overlap
TBP 1 dataset
ChIP GM12878 ENCFF571OXR 70 bp overlap
TOE1 1 dataset
ChIP K562 ENCFF728FRA 140 bp overlap
XBP1 1 dataset
ChIP LNCaP_Tg GSE121880.XBP1.LNCaP_Tg 71 bp overlap
ZNF148 1 dataset
ChIP K562 ENCFF352SDL 123 bp overlap
ZNF264 1 dataset
ChIP HEK293 GSE76494.ZNF264.HEK293 143 bp overlap
ZNF512 2 datasets
ChIP K-562 ENCSR591CCL.ZNF512.K-562 77 bp overlap
ChIP K562 ENCFF601EMZ 251 bp overlap