chr11 : 113,267,251 – 113,267,616
365 bp 27 TFs 1 linked gene
This 365 bp open chromatin element is linked to NCAM1-AS1 and is bound by 27 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
NCAM1-AS1 6.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:113,262,251 – 113,272,616
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
27 transcription factors
Source
Cell type
BRD4 1 dataset
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 84 bp overlap
CTCF 20 datasets
ChIP dorsolateral prefrontal cortex ENCFF245PVD 92 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF257LSY 132 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF267VHH 96 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF277CZQ 105 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF282ONV 55 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF327VLN 123 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF338KEP 71 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF354RKX 61 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF373BUI 102 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF377YBQ 110 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF403LNW 118 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF406ZHG 83 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF433UFM 177 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF458OBF 123 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF628TCI 131 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF677SUG 76 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF696ASB 98 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF748IBN 107 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF767LNC 53 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF812HQJ 127 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 290 bp overlap
EZH2 2 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 102 bp overlap
ChIP A-1847 GSE95643.EZH2.A-1847 206 bp overlap
GATA1 3 datasets
ChIP K-562 ENCSR000EWM.GATA1.K-562 232 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 302 bp overlap
ChIP erythroid-progenitor_EPrec GSE124163.GATA1.erythroid-progenitor_EPrec 143 bp overlap
GATA2 8 datasets
Motif DE_36h DE_36h-GATA2_MA0036.4 7 bp overlap
Motif DE_36h DE_36h-GATA2_MA0036.4 7 bp overlap
ChIP LNCaP GSE38391.GATA2.LNCaP 137 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 137 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 181 bp overlap
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 214 bp overlap
ChIP SH-SY5Y ENCFF485YIB 365 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 306 bp overlap
GATA3 2 datasets
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 234 bp overlap
ChIP T-47D_sc GSE122847.GATA3.T-47D_sc 249 bp overlap
GATA3_Nter 1 dataset
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 333 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 365 bp overlap
ChIP DE DE-GATA4-2 365 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 296 bp overlap
GATA5 2 datasets
Motif DE_36h DE_36h-GATA5_MA0766.3 8 bp overlap
Motif DE_36h DE_36h-GATA5_MA0766.3 8 bp overlap
GATA6 13 datasets
ChIP DE DE-GATA6-1 334 bp overlap
ChIP DE DE-GATA6-2 325 bp overlap
Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap
Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 365 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 365 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 365 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 357 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 365 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 365 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 124 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 365 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 311 bp overlap
GRHL2 1 dataset
Motif DE_36h DE_36h-GRHL2_MA1105.3 8 bp overlap
Gata3 2 datasets
Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap
Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap
JUN 3 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 253 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 260 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 304 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 111 bp overlap
MEIS1 1 dataset
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
Mecom 1 dataset
Motif DE_36h DE_36h-Mecom_MA0029.2 11 bp overlap
NEUROG2 3 datasets
ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 75 bp overlap
ChIP MRC-5_N_02DPT GSE75910.NEUROG2.MRC-5_N_02DPT 105 bp overlap
ChIP MRC-5_N_1DPT GSE75910.NEUROG2.MRC-5_N_1DPT 85 bp overlap
OLIG2 3 datasets
ChIP brain-prefrontal-cortex_2017011 GSE129039.OLIG2.brain-prefrontal-cortex_2017011 114 bp overlap
ChIP brain-prefrontal-cortex_2017014 GSE129039.OLIG2.brain-prefrontal-cortex_2017014 72 bp overlap
ChIP brain-prefrontal-cortex_2017039 GSE129039.OLIG2.brain-prefrontal-cortex_2017039 167 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 365 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 365 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 365 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 365 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 365 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 352 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 340 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 356 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 293 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 191 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 365 bp overlap
TRPS1 2 datasets
Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap
Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap
ZNF768 1 dataset
Motif DE_36h DE_36h-ZNF768_MA1731.2 9 bp overlap
ZNF784 1 dataset
Motif DE_36h DE_36h-ZNF784_MA1717.2 8 bp overlap
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