chr1 : 197,444,950 197,445,269
319 bp 17 TFs 1 linked gene
This 319 bp open chromatin element is linked to CRB1 and is bound by 17 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
CRB1 2.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:197,439,950 – 197,450,269
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
17 transcription factors
Source
Cell type
AR 7 datasets
ChIP DU145_FOXA1 GSE47987.AR.DU145_FOXA1 136 bp overlap
ChIP DU145_FOXA1_ARQ6540X GSE47987.AR.DU145_FOXA1_ARQ6540X 185 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 148 bp overlap
ChIP prostate-cancer_PDX_35 GSE130408.AR.prostate-cancer_PDX_35 172 bp overlap
ChIP prostate-cancer_PDX_58 GSE130408.AR.prostate-cancer_PDX_58 107 bp overlap
ChIP prostate-cancer_PDX_78 GSE130408.AR.prostate-cancer_PDX_78 227 bp overlap
ChIP prostate_P7_T GSE130408.AR.prostate_P7_T 130 bp overlap
BRD4 2 datasets
ChIP HeLa GSE151038.BRD4.HeLa 228 bp overlap
ChIP HeLa_JQ1 GSE151038.BRD4.HeLa_JQ1 104 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 110 bp overlap
FOS 1 dataset
ChIP HeLa-S3 ENCSR000EZE.FOS.HeLa-S3 157 bp overlap
FOSL2 1 dataset
ChIP hESC GSE69539.FOSL2.hESC 59 bp overlap
FOXA1 16 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 198 bp overlap
ChIP LNCaP-C4-2B_CST GSE123618.FOXA1.LNCaP-C4-2B_CST 186 bp overlap
ChIP LNCaP-abl GSE63034.FOXA1.LNCaP-abl 150 bp overlap
ChIP LNCaP_G87R_shFOXA1 GSE128883.FOXA1.LNCaP_G87R_shFOXA1 74 bp overlap
ChIP LNCaP_GSK GSE148926.FOXA1.LNCaP_GSK 227 bp overlap
ChIP LNCaP_L388M_shFOXA1 GSE128883.FOXA1.LNCaP_L388M_shFOXA1 127 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 97 bp overlap
ChIP MCF-7_E2 GSE23852.FOXA1.MCF-7_E2 125 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 268 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 98 bp overlap
ChIP T-47D_DMSO GSE84593.FOXA1.T-47D_DMSO 169 bp overlap
ChIP T-47D_JC4742 GSE126004.FOXA1.T-47D_JC4742 103 bp overlap
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 109 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 157 bp overlap
ChIP prostate_P5_T GSE130408.FOXA1.prostate_P5_T 205 bp overlap
ChIP prostate_P7_T GSE130408.FOXA1.prostate_P7_T 231 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 319 bp overlap
ChIP DE DE-FOXA2-2 319 bp overlap
FOXJ2 1 dataset
ChIP K562 ENCFF457GZC 276 bp overlap
GATA4 4 datasets
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 216 bp overlap
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 131 bp overlap
ChIP DE DE-GATA4-1 319 bp overlap
ChIP DE DE-GATA4-2 319 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-1 59 bp overlap
ChIP DE DE-GATA6-2 319 bp overlap
HOXB13 2 datasets
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 163 bp overlap
ChIP prostate_P7_T GSE130408.HOXB13.prostate_P7_T 195 bp overlap
MAX 1 dataset
ChIP HeLa-S3 ENCSR000EZF.MAX.HeLa-S3 143 bp overlap
MYC 1 dataset
ChIP HeLa-S3 ENCSR000EZD.MYC.HeLa-S3 96 bp overlap
PGR 5 datasets
ChIP AB32 GSE31129.PGR.AB32 241 bp overlap
ChIP T-47D_PROG GSE68355.PGR.T-47D_PROG 98 bp overlap
ChIP T-47D_R5020 GSE68355.PGR.T-47D_R5020 132 bp overlap
ChIP T-47D_R5020-A1 GSE126859.PGR.T-47D_R5020-A1 67 bp overlap
ChIP T-47D_R5020-MTVL GSE126859.PGR.T-47D_R5020-MTVL 116 bp overlap
RELA 1 dataset
ChIP SGBS GSE64233.RELA.SGBS 226 bp overlap
SMARCA4 1 dataset
ChIP A-549_AG15721 GSE132290.SMARCA4.A-549_AG15721 71 bp overlap
UBN1 1 dataset
ChIP HeLa GSE45024.UBN1.HeLa 109 bp overlap