chr9 : 127,027,806 127,028,318
512 bp 28 TFs 4 linked genes
This 512 bp open chromatin element is linked to 4 target genes and is bound by 28 transcription factors.
Linked Genes
4 genes
Gene Expression Dist. to TSS Distance Link type
RALGPS1 113.2 kb Distal Multiome
ZBTB34 167.4 kb Distal Multiome
GARNL3 197.2 kb Distal Multiome
ZBTB43 223.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:127,022,806 – 127,033,318
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
28 transcription factors
Source
Cell type
CEBPB 1 dataset
ChIP K562 ENCFF584CTB 346 bp overlap
CEBPG 2 datasets
ChIP K-562 ENCSR490LWA.CEBPG.K-562 221 bp overlap
ChIP K562 ENCFF956TPS 316 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 160 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 197 bp overlap
EZH2 1 dataset
ChIP DND41 ENCSR000ASW.EZH2.DND41 512 bp overlap
FOXA1 4 datasets
ChIP T-47D_JC4743 GSE126004.FOXA1.T-47D_JC4743 197 bp overlap
ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 173 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 318 bp overlap
ChIP primary-prostate-cancer_P2_DSG GSE114737.FOXA1.primary-prostate-cancer_P2_DSG 363 bp overlap
FOXA2 4 datasets
ChIP Caco-2 GSE66218.FOXA2.Caco-2 180 bp overlap
ChIP DE DE-FOXA2-1 512 bp overlap
ChIP DE DE-FOXA2-2 512 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 304 bp overlap
GATA4 5 datasets
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 271 bp overlap
ChIP DE DE-GATA4-1 419 bp overlap
ChIP DE DE-GATA4-2 461 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 420 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 271 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 433 bp overlap
ChIP DE DE-GATA6-2 459 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 261 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 369 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 227 bp overlap
MAX 1 dataset
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 135 bp overlap
MEIS2 1 dataset
ChIP K-562 ENCSR851BNE.MEIS2.K-562 163 bp overlap
PBX2 2 datasets
ChIP K-562 ENCSR263DFP.PBX2.K-562 214 bp overlap
ChIP K562 ENCFF286KMN 287 bp overlap
PDX1 4 datasets
ChIP hESC GSE58685.PDX1.hESC 142 bp overlap
ChIP hiPSC GSE125768.PDX1.hiPSC 251 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 161 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 281 bp overlap
PGR 1 dataset
ChIP myometrium_NP1 GSE137550.PGR.myometrium_NP1 97 bp overlap
POLR2A 2 datasets
ChIP prostate gland ENCFF881OMH 308 bp overlap
ChIP vagina ENCFF305NWS 307 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 356 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 512 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 492 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 413 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 397 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 439 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 278 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 495 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 368 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 256 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 294 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 501 bp overlap
TFAP2C 1 dataset
ChIP HCC1954 GSE126897.TFAP2C.HCC1954 55 bp overlap
TP63 11 datasets
ChIP BxPC-3 GSE115461.TP63.BxPC-3 304 bp overlap
ChIP HaCaT_LacZ_TGFB GSE60814.TP63.HaCaT_LacZ_TGFB 169 bp overlap
ChIP MCF-10A_Nutlin3A GSE111009.TP63.MCF-10A_Nutlin3A 344 bp overlap
ChIP SUIT-2 GSE115461.TP63.SUIT-2 372 bp overlap
ChIP keratinocyte GSE56674.TP63.keratinocyte 260 bp overlap
ChIP keratinocyte_CISP GSE56674.TP63.keratinocyte_CISP 262 bp overlap
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 321 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 321 bp overlap
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 301 bp overlap
ChIP keratinocyte_D7 GSE59824.TP63.keratinocyte_D7 296 bp overlap
ChIP keratinocyte_epidermal GSE67382.TP63.keratinocyte_epidermal 251 bp overlap
USF1 4 datasets
ChIP H1 ENCFF090WVU 148 bp overlap
ChIP K-562 ENCSR000BKT.USF1.K-562 123 bp overlap
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 100 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 121 bp overlap
USF2 1 dataset
ChIP HeLa-S3 ENCSR000ECW.USF2.HeLa-S3 85 bp overlap
ZFP36 1 dataset
ChIP K-562 ENCSR776CYN.ZFP36.K-562 105 bp overlap