chr1 : 115,536,244 115,536,776
532 bp 29 TFs 2 linked genes
This 532 bp open chromatin element is linked to VANGL1 and TSPAN2 and is bound by 29 transcription factors.
Linked Genes
2 genes
Link type
Gene Expression Dist. to TSS Distance Link type
VANGL1 105.5 kb Distal Multiome
TSPAN2 446.9 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:115,531,244 – 115,541,776
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
29 transcription factors
Source
Cell type
BRD3 1 dataset
ChIP H-1_DE GSE126661.BRD3.H-1_DE 264 bp overlap
ESR1 2 datasets
ChIP MCF-7_E2 GSE102410.ESR1.MCF-7_E2 226 bp overlap
ChIP MCF-7_Tamoxifen GSE102410.ESR1.MCF-7_Tamoxifen 185 bp overlap
ESR2 1 dataset
Motif DE_72h DE_72h-ESR2_MA0258.2 15 bp overlap
FOXA1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 194 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 532 bp overlap
ChIP DE DE-FOXA2-2 532 bp overlap
GATA2 2 datasets
ChIP LNCaP GSE38391.GATA2.LNCaP 229 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 229 bp overlap
GATA3 1 dataset
ChIP MCF-7 GSE122847.GATA3.MCF-7 229 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 532 bp overlap
ChIP DE DE-GATA4-2 532 bp overlap
ChIP foregut GSE117136.GATA4.foregut 456 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 366 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-1 458 bp overlap
ChIP DE DE-GATA6-2 532 bp overlap
HIF1A 1 dataset
ChIP U2OS_trough_DMOG GSE85096.HIF1A.U2OS_trough_DMOG 192 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 202 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 238 bp overlap
Pgr 1 dataset
Motif DE_72h DE_72h-Pgr_MA2323.1 17 bp overlap
RUNX3 1 dataset
Motif DE_72h DE_72h-RUNX3_MA0684.3 8 bp overlap
SIX2 1 dataset
Motif DE_72h DE_72h-SIX2_MA1119.2 11 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 320 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 489 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 423 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 507 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 358 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 252 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 362 bp overlap
SS18 1 dataset
ChIP Aska-SS GSE108025.SS18.Aska-SS 361 bp overlap
TEAD1 1 dataset
ChIP keratinocyte GSE138727.TEAD1.keratinocyte 317 bp overlap
TLE3 1 dataset
ChIP LNCaP GSE94682.TLE3.LNCaP 211 bp overlap
TP63 8 datasets
ChIP MCF-10A_Nutlin3A GSE111009.TP63.MCF-10A_Nutlin3A 251 bp overlap
ChIP keratinocyte GSE56674.TP63.keratinocyte 254 bp overlap
ChIP keratinocyte_CISP GSE56674.TP63.keratinocyte_CISP 185 bp overlap
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 153 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 252 bp overlap
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 218 bp overlap
ChIP keratinocyte_D7 GSE59824.TP63.keratinocyte_D7 197 bp overlap
ChIP keratinocyte_epidermal GSE67382.TP63.keratinocyte_epidermal 192 bp overlap
ZNF684 1 dataset
Motif DE_72h DE_72h-ZNF684_MA1600.2 14 bp overlap
ZNF766 1 dataset
Motif DE_72h DE_72h-ZNF766_MA2098.1 9 bp overlap
Zfx 1 dataset
Motif DE_72h DE_72h-Zfx_MA0146.3 10 bp overlap