chr6 : 56,885,624 56,886,561
937 bp 31 TFs 0 linked genes
This 937 bp open chromatin element has no linked target genes and is bound by 31 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:56,880,624 – 56,891,561
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
31 transcription factors
Source
Cell type
ATF2 1 dataset
ChIP Hep-G2 ENCSR047BUZ.ATF2.Hep-G2 56 bp overlap
CRY1 1 dataset
ChIP U2OS_cordycepin GSE130506.CRY1.U2OS_cordycepin 143 bp overlap
CTCF 2 datasets
Motif DE_60h DE_60h-CTCF_MA1929.2 31 bp overlap
ChIP GM13977 ENCFF528ESQ 164 bp overlap
CUX1 1 dataset
ChIP K-562_shCUX1-A GSE92882.CUX1.K-562_shCUX1-A 144 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 224 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 477 bp overlap
FOXA1 8 datasets
ChIP HepG2 ENCFF207NVJ 281 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 252 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 263 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 184 bp overlap
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 298 bp overlap
ChIP T-47D_shRNF2_24h GSE137579.FOXA1.T-47D_shRNF2_24h 184 bp overlap
ChIP T-47D_shRNF2_8h GSE137579.FOXA1.T-47D_shRNF2_8h 185 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 370 bp overlap
FOXA2 6 datasets
ChIP BJ1-hTERT_MimoRelease GSE92491.FOXA2.BJ1-hTERT_MimoRelease 260 bp overlap
ChIP DE DE-FOXA2-1 775 bp overlap
ChIP DE DE-FOXA2-2 865 bp overlap
ChIP HepG2 ENCFF533COJ 297 bp overlap
ChIP PANC-1 GSE119930.FOXA2.PANC-1 293 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 440 bp overlap
FOXP1 1 dataset
ChIP Hep-G2 ENCSR369YUK.FOXP1.Hep-G2 154 bp overlap
GATA4 7 datasets
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 346 bp overlap
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 328 bp overlap
ChIP DE DE-GATA4-1 744 bp overlap
ChIP DE DE-GATA4-2 732 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 678 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 446 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 685 bp overlap
ChIP DE DE-GATA6-2 849 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 556 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 402 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 610 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 408 bp overlap
KDM1A 2 datasets
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 297 bp overlap
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 463 bp overlap
NFIA 1 dataset
Motif DE_60h DE_60h-NFIA_MA0670.2 6 bp overlap
NFIX 1 dataset
Motif DE_60h DE_60h-NFIX_MA0671.2 6 bp overlap
NR2F6 1 dataset
ChIP Hep-G2 ENCSR518WPL.NR2F6.Hep-G2 167 bp overlap
ONECUT1 4 datasets
ChIP H9 ERP004206.ONECUT1.H9 295 bp overlap
ChIP Hep-G2 ENCSR956OSX.ONECUT1.Hep-G2 265 bp overlap
ChIP HepG2 ENCFF243FIR 341 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 488 bp overlap
ONECUT2 3 datasets
ChIP A-549 GSE102599.ONECUT2.A-549 906 bp overlap
ChIP AGS_Overexpression GSE113045.ONECUT2.AGS_Overexpression 289 bp overlap
ChIP PC-3_normoxia GSE106305.ONECUT2.PC-3_normoxia 342 bp overlap
PAX5 1 dataset
ChIP fetal_testis GSE100639.PAX5.fetal_testis 205 bp overlap
PDX1 1 dataset
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 386 bp overlap
POU5F1 1 dataset
Motif DE_60h DE_60h-POU5F1_MA1115.2 7 bp overlap
Pgr 1 dataset
Motif DE_60h DE_60h-Pgr_MA2323.1 17 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 261 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 588 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 522 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 435 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 158 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 292 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 442 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 350 bp overlap
ZNF382 1 dataset
Motif DE_60h DE_60h-ZNF382_MA1594.1 24 bp overlap
ZNF684 1 dataset
Motif DE_60h DE_60h-ZNF684_MA1600.2 14 bp overlap