chr5 : 140,696,939 140,697,394
455 bp 21 TFs 3 linked genes
This 455 bp open chromatin element is linked to ZMAT2, HARS2, and HARS1 and is bound by 21 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
ZMAT2 3.1 kb Proximal Proximity
HARS2 5.5 kb Proximal Proximity
HARS1 5.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:140,691,939 – 140,702,394
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
21 transcription factors
Source
Cell type
AR 1 dataset
ChIP MCF-7 GSE48930.AR.MCF-7 168 bp overlap
CLOCK 1 dataset
ChIP U2OS GSE44236.CLOCK.U2OS 162 bp overlap
CRY1 1 dataset
ChIP U2OS GSE44236.CRY1.U2OS 211 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF335XTP 280 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 393 bp overlap
ChIP DE DE-FOXA2-2 386 bp overlap
FOXP1 1 dataset
ChIP LNCaP GSE62492.FOXP1.LNCaP 105 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 377 bp overlap
ChIP DE DE-GATA4-2 360 bp overlap
ChIP foregut GSE117136.GATA4.foregut 251 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 408 bp overlap
ChIP DE DE-GATA6-2 415 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 259 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 310 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 238 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 316 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 301 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 297 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 233 bp overlap
ChIP foregut GSE117136.GATA6.foregut 245 bp overlap
GLIS3 1 dataset
Motif DE_72h DE_72h-GLIS3_MA0737.1 14 bp overlap
KMT2A 1 dataset
ChIP OCI-AML-3_DMSO GSE129636.KMT2A.OCI-AML-3_DMSO 228 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 344 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 301 bp overlap
ZIC1 1 dataset
Motif DE_72h DE_72h-ZIC1_MA0696.1 14 bp overlap
ZIC4 1 dataset
Motif DE_72h DE_72h-ZIC4_MA0751.2 14 bp overlap
ZIC5 3 datasets
Motif DE_72h DE_72h-ZIC5_MA1584.2 15 bp overlap
ChIP HCT-116_WT-CT289 GSE127960.ZIC5.HCT-116_WT-CT289 334 bp overlap
ChIP HCT-116_sc1 GSE127960.ZIC5.HCT-116_sc1 255 bp overlap
ZNF140 1 dataset
Motif DE_72h DE_72h-ZNF140_MA1589.2 19 bp overlap
ZNF331 1 dataset
Motif DE_72h DE_72h-ZNF331_MA1726.2 10 bp overlap
Zic2 1 dataset
Motif DE_72h DE_72h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_72h DE_72h-Zic3_MA0697.3 7 bp overlap