chr5 : 135,828,079 135,828,565
486 bp 23 TFs 2 linked genes
This 486 bp open chromatin element is linked to SLC25A48 and ENSG00000250378 and is bound by 23 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
SLC25A48 6.1 kb Proximal Proximity
ENSG00000250378 6.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:135,823,079 – 135,833,565
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
23 transcription factors
Source
Cell type
AR 2 datasets
ChIP LNCaP_R1881 GSE69043.AR.LNCaP_R1881 150 bp overlap
ChIP breast_tumor_Male_26 GSE104399.AR.breast_tumor_Male_26 378 bp overlap
BRD4 3 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 152 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 207 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 167 bp overlap
CTCF 2 datasets
ChIP HT-1080 GSE135580.CTCF.HT-1080 206 bp overlap
ChIP HT-1080 GSE135580.CTCF.HT-1080 65 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 445 bp overlap
ERG 1 dataset
ChIP aortic-endothelial-cell_D5 GSE139377.ERG.aortic-endothelial-cell_D5 104 bp overlap
ESR1 9 datasets
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 168 bp overlap
ChIP MCF-7_E2-10min-ERalpha GSE94023.ESR1.MCF-7_E2-10min-ERalpha 151 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 168 bp overlap
ChIP MCF-7_estradiol-Dex_4h GSE99626.ESR1.MCF-7_estradiol-Dex_4h 310 bp overlap
ChIP SUM44PE_ESR1_wildtype GSE100074.ESR1.SUM44PE_ESR1_wildtype 464 bp overlap
ChIP T-47D_PROG GSE68355.ESR1.T-47D_PROG 292 bp overlap
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 183 bp overlap
ChIP breast_tumor_Male_14 GSE104399.ESR1.breast_tumor_Male_14 418 bp overlap
ChIP breast_tumor_Male_26 GSE104399.ESR1.breast_tumor_Male_26 461 bp overlap
ESR1_Y537C 1 dataset
ChIP SUM44PE__ESR1_mutant_LTED GSE100074.ESR1_Y537C.SUM44PE__ESR1_mutant_LTED 486 bp overlap
ESR1_Y537S 2 datasets
ChIP MCF-7_E2 GSE94493.ESR1_Y537S.MCF-7_E2 262 bp overlap
ChIP T-47D_E2 GSE94493.ESR1_Y537S.T-47D_E2 197 bp overlap
EZH2 2 datasets
ChIP T98G GSE112240.EZH2.T98G 207 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 208 bp overlap
FOXA1 1 dataset
ChIP breast_tumor_Male_14 GSE104399.FOXA1.breast_tumor_Male_14 416 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 304 bp overlap
GATA1 2 datasets
ChIP K-562 GSE107726.GATA1.K-562 189 bp overlap
ChIP erythroid-progenitor GSE124163.GATA1.erythroid-progenitor 146 bp overlap
GATA2 7 datasets
ChIP LNCaP GSE38391.GATA2.LNCaP 171 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 171 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 195 bp overlap
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 279 bp overlap
ChIP SH-SY5Y ENCFF485YIB 308 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 249 bp overlap
ChIP hiPSC_SLC9ebs GSE107639.GATA2.hiPSC_SLC9ebs 189 bp overlap
GATA3 4 datasets
ChIP MCF-7 GSE51274.GATA3.MCF-7 204 bp overlap
ChIP NGP GSE65664.GATA3.NGP 222 bp overlap
ChIP T-47D GSE51274.GATA3.T-47D 486 bp overlap
ChIP T-47D ENCSR000BMX.GATA3.T-47D 204 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 408 bp overlap
ChIP DE DE-GATA4-2 486 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 275 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 321 bp overlap
ChIP DE DE-GATA6-2 397 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 240 bp overlap
GRHL2 2 datasets
ChIP MCF-7 GSE99680.GRHL2.MCF-7 140 bp overlap
ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 298 bp overlap
PGR 5 datasets
ChIP T-47D GSE31129.PGR.T-47D 235 bp overlap
ChIP T-47D_PROG GSE68355.PGR.T-47D_PROG 445 bp overlap
ChIP T-47D_R5020 GSE68355.PGR.T-47D_R5020 253 bp overlap
ChIP T-47D_R5020-MTVL GSE126859.PGR.T-47D_R5020-MTVL 215 bp overlap
ChIP breast_tumor_Male_26 GSE104399.PGR.breast_tumor_Male_26 486 bp overlap
REST 7 datasets
ChIP H1 ENCFF429RUE 245 bp overlap
ChIP HeLa-S3 ENCSR000BMN.REST.HeLa-S3 127 bp overlap
ChIP Hep-G2 ENCSR000BJL.REST.Hep-G2 97 bp overlap
ChIP Ishikawa ENCSR000BUU.REST.Ishikawa 179 bp overlap
ChIP K-562 ENCSR000BMW.REST.K-562 134 bp overlap
ChIP PANC-1 ENCSR000BJO.REST.PANC-1 194 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 210 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 404 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 260 bp overlap