chr5 : 110,639,439 110,640,001
562 bp 30 TFs 0 linked genes
This 562 bp open chromatin element has no linked target genes and is bound by 30 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:110,634,439 – 110,645,001
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
30 transcription factors
Source
Cell type
BHLHE41 1 dataset
Motif DE_12h DE_12h-BHLHE41_MA0636.1 10 bp overlap
CRY1 1 dataset
ChIP U2OS GSE44236.CRY1.U2OS 241 bp overlap
DUX4 1 dataset
Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap
DUXA 1 dataset
Motif DE_12h DE_12h-DUXA_MA0884.2 13 bp overlap
Dux 1 dataset
Motif DE_12h DE_12h-Dux_MA0611.3 11 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 269 bp overlap
MITF 8 datasets
ChIP 501-mel GSE137522.MITF.501-mel 555 bp overlap
ChIP 501-mel GSE61965.MITF.501-mel 323 bp overlap
ChIP 501-mel_20ng_K243R GSE137522.MITF.501-mel_20ng_K243R 535 bp overlap
ChIP 501-mel_K243Q GSE137522.MITF.501-mel_K243Q 521 bp overlap
ChIP 501-mel_K243R GSE137522.MITF.501-mel_K243R 234 bp overlap
Motif DE_12h DE_12h-MITF_MA0620.4 10 bp overlap
ChIP K-562 ENCSR797SWM.MITF.K-562 204 bp overlap
ChIP melanocyte_BRAFV600E GSE50681.MITF.melanocyte_BRAFV600E 168 bp overlap
MXI1 1 dataset
Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap
NR2C1 1 dataset
Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap
Nr1H2 1 dataset
Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap
PHF19 1 dataset
ChIP DU145_CTR GSE135623.PHF19.DU145_CTR 364 bp overlap
PHOX2A 1 dataset
Motif DE_12h DE_12h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 3 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 367 bp overlap
Motif DE_12h DE_12h-PHOX2B_MA0681.3 12 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 271 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 386 bp overlap
PROP1 1 dataset
Motif DE_12h DE_12h-PROP1_MA0715.1 11 bp overlap
SMARCA4 1 dataset
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 187 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 210 bp overlap
SREBF2 1 dataset
Motif DE_12h DE_12h-SREBF2_MA0828.3 10 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 375 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 375 bp overlap
TFE3 2 datasets
Motif DE_12h DE_12h-TFE3_MA0831.3 10 bp overlap
ChIP K562 ENCFF697ABG 317 bp overlap
TFEB 1 dataset
Motif DE_12h DE_12h-TFEB_MA0692.2 8 bp overlap
TFEC 1 dataset
Motif DE_12h DE_12h-TFEC_MA0871.3 8 bp overlap
USF1 5 datasets
Motif DE_12h DE_12h-USF1_MA0093.4 10 bp overlap
ChIP H1 ENCFF090WVU 241 bp overlap
ChIP SK-N-SH ENCFF967PDP 311 bp overlap
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 297 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 283 bp overlap
USF2 3 datasets
Motif DE_12h DE_12h-USF2_MA0526.5 10 bp overlap
ChIP GM12878 GSE97661.USF2.GM12878 189 bp overlap
ChIP Hep-G2 GSE97661.USF2.Hep-G2 156 bp overlap
ZNF143 1 dataset
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 150 bp overlap
ZNF528 1 dataset
ChIP HEK293 GSE76494.ZNF528.HEK293 220 bp overlap