chr5 : 20,615,890 20,616,303
413 bp 22 TFs 1 linked gene
This 413 bp open chromatin element is linked to LINC02241 and is bound by 22 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LINC02241 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:20,610,890 – 20,621,303
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
22 transcription factors
Source
Cell type
ARNTL 1 dataset
ChIP U2OS GSE44236.ARNTL.U2OS 182 bp overlap
BRD4 2 datasets
ChIP IMR-90_QUIES GSE74238.BRD4.IMR-90_QUIES 119 bp overlap
ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 338 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 132 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 216 bp overlap
CHD2 2 datasets
ChIP K-562 ENCSR000EHD.CHD2.K-562 83 bp overlap
ChIP K562 ENCFF857WME 117 bp overlap
CTCF 1 dataset
ChIP delta-47 GSE70764.CTCF.delta-47 183 bp overlap
ERG 1 dataset
ChIP SKNO-1 GSE23730.ERG.SKNO-1 227 bp overlap
ESR1 4 datasets
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 275 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 325 bp overlap
ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 300 bp overlap
ChIP MCF-7_Veh GSE93510.ESR1.MCF-7_Veh 412 bp overlap
GFI1B 1 dataset
ChIP K-562_Wnt GSE117944.GFI1B.K-562_Wnt 155 bp overlap
GRHL2 1 dataset
ChIP OVCAR-3 GSE71018.GRHL2.OVCAR-3 136 bp overlap
JUN 1 dataset
ChIP MDA-BoM-1833_shp27 GSE112444.JUN.MDA-BoM-1833_shp27 195 bp overlap
KDM1A 1 dataset
ChIP K-562 GSE117944.KDM1A.K-562 194 bp overlap
MED1 1 dataset
ChIP MCF-7_SHRARS GSE60270.MED1.MCF-7_SHRARS 168 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 209 bp overlap
POU2F1 1 dataset
ChIP IMR-90_TERT GSE38303.POU2F1.IMR-90_TERT 81 bp overlap
POU5F1 1 dataset
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 193 bp overlap
RELA 1 dataset
ChIP KB GSE52469.RELA.KB 160 bp overlap
SP1 1 dataset
ChIP K-562 ENCSR991ELG.SP1.K-562 127 bp overlap
TRIM28 1 dataset
ChIP hESC GSE115387.TRIM28.hESC 333 bp overlap
ZBTB33 2 datasets
ChIP SK-N-SH ENCFF667JYU 246 bp overlap
ChIP SK-N-SH ENCSR000BTS.ZBTB33.SK-N-SH 95 bp overlap
ZNF283 1 dataset
ChIP HEK293T GSE78099.ZNF283.HEK293T 157 bp overlap
ZNF528 1 dataset
ChIP HEK293 GSE76494.ZNF528.HEK293 188 bp overlap