chr4 : 54,234,977 – 54,235,133
156 bp 16 TFs 1 linked gene
This 156 bp open chromatin element is linked to PDGFRA and is bound by 16 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PDGFRA 5.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:54,229,977 – 54,240,133
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
16 transcription factors
Source
Cell type
CTCF 153 datasets
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 110 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 156 bp overlap
ChIP A-549 ENCSR000AUE.CTCF.A-549 105 bp overlap
ChIP A-549 ENCSR000DNA.CTCF.A-549 116 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 103 bp overlap
ChIP A549 ENCFF182TCQ 156 bp overlap
ChIP AG04449 ENCFF248MBD 149 bp overlap
ChIP AG09309 ENCFF478XPS 156 bp overlap
ChIP AG10803 ENCFF549AQK 156 bp overlap
ChIP BE2C ENCFF757SRF 156 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 156 bp overlap
ChIP BJ ENCSR000DQI.CTCF.BJ 156 bp overlap
ChIP C4-2B ENCFF821XVN 156 bp overlap
ChIP COLO-829 GSE81945.CTCF.COLO-829 131 bp overlap
ChIP Caco-2 ENCFF934QYS 144 bp overlap
ChIP Caco-2 ENCSR000DQN.CTCF.Caco-2 102 bp overlap
ChIP D54 ENCSR000DKN.CTCF.D54 152 bp overlap
ChIP FT282 GSE131931.CTCF.FT282 154 bp overlap
ChIP FT282_EV GSE131931.CTCF.FT282_EV 121 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 156 bp overlap
ChIP GM23338 ENCFF772DML 156 bp overlap
ChIP H54 ENCFF255TVO 156 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 156 bp overlap
ChIP HCT-116 ENCSR000DTO.CTCF.HCT-116 115 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.CTCF.HCT-116_RAD21-mAC 81 bp overlap
ChIP HCT-116_RAD21-mAC_500uM_auxin GSE104888.CTCF.HCT-116_RAD21-mAC_500uM_auxin 156 bp overlap
ChIP HCT116 ENCFF209YMI 156 bp overlap
ChIP HEK293 ENCFF498RMM 156 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 123 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.CTCF.HeLa-Kyoto_PDS5-depleted 148 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL_PDS-depleted 156 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 156 bp overlap
ChIP HeLa-S3 ENCSR000DUB.CTCF.HeLa-S3 102 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 156 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 156 bp overlap
ChIP HeLa_dC9Sun-D3AMut_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3AMut_MIR152 124 bp overlap
ChIP HeLa_dC9Sun-D3A_CDCC85C GSE107607.CTCF.HeLa_dC9Sun-D3A_CDCC85C 156 bp overlap
ChIP HeLa_dC9Sun-D3A_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3A_MIR152 124 bp overlap
ChIP HeLa_dC9Sun-D3A_SHB GSE107607.CTCF.HeLa_dC9Sun-D3A_SHB 154 bp overlap
ChIP Hep-G2 ENCSR000AMA.CTCF.Hep-G2 156 bp overlap
ChIP Hep-G2 ENCSR000DLS.CTCF.Hep-G2 100 bp overlap
ChIP HepG2 ENCFF127KUP 156 bp overlap
ChIP HepG2 ENCFF348BUL 156 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 149 bp overlap
ChIP K-562_RabbitC GSE137216.CTCF.K-562_RabbitC 147 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 156 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 120 bp overlap
ChIP LNCaP ENCSR315NAC.CTCF.LNCaP 156 bp overlap
ChIP LNCaP clone FGC ENCFF519YVI 139 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 151 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 156 bp overlap
ChIP MCF-10A GSE98551.CTCF.MCF-10A 156 bp overlap
ChIP MCF-10AT1 GSE98551.CTCF.MCF-10AT1 156 bp overlap
ChIP MCF-10CA1a GSE98551.CTCF.MCF-10CA1a 156 bp overlap
ChIP MCF-7 ENCFF139NQI 156 bp overlap
ChIP MCF-7 ENCFF198DQX 156 bp overlap
ChIP MCF-7 ENCFF414SZG 156 bp overlap
ChIP MCF-7 ENCFF494VXA 156 bp overlap
ChIP MCF-7 ENCFF844STM 152 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 156 bp overlap
ChIP MCF-7 GSE137216.CTCF.MCF-7 156 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 156 bp overlap
ChIP MCF-7 ENCSR000AHD.CTCF.MCF-7 138 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 151 bp overlap
ChIP MCF-7 ENCSR000DMS.CTCF.MCF-7 132 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 111 bp overlap
ChIP MCF-7 ERP000380.CTCF.MCF-7 137 bp overlap
ChIP MCF-7L_t0 GSE108787.CTCF.MCF-7L_t0 156 bp overlap
ChIP MCF-7L_t1 GSE108787.CTCF.MCF-7L_t1 156 bp overlap
ChIP MCF-7_E2 ERP000380.CTCF.MCF-7_E2 110 bp overlap
ChIP MCF-7_NORMOXIA GSE78113.CTCF.MCF-7_NORMOXIA 139 bp overlap
ChIP MDA-MB-157 GSE116868.CTCF.MDA-MB-157 123 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 156 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 70 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 156 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 156 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 156 bp overlap
ChIP PANC-1 ENCSR203QEB.CTCF.PANC-1 156 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 156 bp overlap
ChIP Panc1 ENCFF056JQX 156 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 156 bp overlap
ChIP SH-SY5Y GSE101295.CTCF.SH-SY5Y 103 bp overlap
ChIP SK-MEL-147 GSE94488.CTCF.SK-MEL-147 87 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 156 bp overlap
ChIP SK-N-SH ENCFF731NJX 156 bp overlap
ChIP SK-N-SH ENCSR000EIC.CTCF.SK-N-SH 143 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 99 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-000m 156 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-025m-Flavo-000m 141 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-045m-Flavo-000m 156 bp overlap
ChIP THP-1_Pam3csk-060m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-060m-Flavo-000m 156 bp overlap
ChIP THP-1_Pam3csk-120m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-120m-Flavo-000m 156 bp overlap
ChIP THP-1_Pam3csk-180m-Flavo-060m GSE103477.CTCF.THP-1_Pam3csk-180m-Flavo-060m 131 bp overlap
ChIP THP-1_siCtrl-NS1-Pam3csk-4h GSE103477.CTCF.THP-1_siCtrl-NS1-Pam3csk-4h 75 bp overlap
ChIP THP-1_siCtrl-NS1-Pam3csk-7h-Flavo-3h GSE103477.CTCF.THP-1_siCtrl-NS1-Pam3csk-7h-Flavo-3h 154 bp overlap
ChIP THP-1_siWAPL-NS1-Pam3csk-4h GSE103477.CTCF.THP-1_siWAPL-NS1-Pam3csk-4h 156 bp overlap
ChIP THP-1_siWAPL-eGFP-Pam3csk-4h GSE103477.CTCF.THP-1_siWAPL-eGFP-Pam3csk-4h 54 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 156 bp overlap
ChIP VCaP_ETOH GSE84432.CTCF.VCaP_ETOH 140 bp overlap
ChIP astrocyte ENCSR000AOO.CTCF.astrocyte 156 bp overlap
ChIP astrocyte of the cerebellum ENCFF511OCS 156 bp overlap
ChIP astrocyte_cerebellum ENCSR000DSZ.CTCF.astrocyte_cerebellum 141 bp overlap
ChIP astrocyte_spinal_cord ENCSR000DSU.CTCF.astrocyte_spinal_cord 121 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 156 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 76 bp overlap
ChIP cardiac_muscle ENCSR000DTI.CTCF.cardiac_muscle 150 bp overlap
ChIP chondrocyte ENCFF134ORZ 156 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 156 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 156 bp overlap
ChIP colon_transverse ENCSR833FWC.CTCF.colon_transverse 156 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF442YDO 156 bp overlap
ChIP endothelial cell of umbilical vein ENCFF677IZD 156 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 156 bp overlap
ChIP endothelial_umbilical-vein ENCSR000ALA.CTCF.endothelial_umbilical-vein 156 bp overlap
ChIP endothelial_umbilical-vein ENCSR000DVP.CTCF.endothelial_umbilical-vein 131 bp overlap
ChIP endothelial_umbilical-vein ENCSR000DLW.CTCF.endothelial_umbilical-vein 116 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 156 bp overlap
ChIP epithelial_esophagus ENCSR000DTR.CTCF.epithelial_esophagus 103 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 138 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 156 bp overlap
ChIP erythroblast_adult_erythroblasts GSE102184.CTCF.erythroblast_adult_erythroblasts 156 bp overlap
ChIP esophagus_squamous-epithelium ENCSR450FRI.CTCF.esophagus_squamous-epithelium 141 bp overlap
ChIP fibroblast of lung ENCFF505HVQ 156 bp overlap
ChIP fibroblast of pulmonary artery ENCFF742RSV 156 bp overlap
ChIP fibroblast of the aortic adventitia ENCFF639DMR 156 bp overlap
ChIP fibroblast_AORTIC_ADVENTITIA ENCSR000DPY.CTCF.fibroblast_AORTIC_ADVENTITIA 123 bp overlap
ChIP fibroblast_CARDIAC ENCSR000DTF.CTCF.fibroblast_CARDIAC 129 bp overlap
ChIP fibroblast_FORESKIN ENCSR000DUH.CTCF.fibroblast_FORESKIN 156 bp overlap
ChIP fibroblast_FORESKIN ENCSR000DWQ.CTCF.fibroblast_FORESKIN 156 bp overlap
ChIP fibroblast_GINGIVA ENCSR000DPS.CTCF.fibroblast_GINGIVA 156 bp overlap
ChIP fibroblast_LUNG ENCSR000DWY.CTCF.fibroblast_LUNG 154 bp overlap
ChIP fibroblast_LUNG ENCSR000DPM.CTCF.fibroblast_LUNG 67 bp overlap
ChIP fibroblast_PULMONARY_ARTERY ENCSR000DUX.CTCF.fibroblast_PULMONARY_ARTERY 156 bp overlap
ChIP fibroblast_SKIN_ABDOMEN ENCSR000DPV.CTCF.fibroblast_SKIN_ABDOMEN 130 bp overlap
ChIP fibroblast_SKIN_LEG ENCSR000DPG.CTCF.fibroblast_SKIN_LEG 131 bp overlap
ChIP fibroblast_VILLOUS_MESENCHYME ENCSR000DVQ.CTCF.fibroblast_VILLOUS_MESENCHYME 144 bp overlap
ChIP foreskin fibroblast ENCFF219EBQ 156 bp overlap
ChIP foreskin fibroblast ENCFF671HLG 156 bp overlap
ChIP foreskin keratinocyte ENCFF980OWR 143 bp overlap
ChIP gastroesophageal-sphincter ENCSR146BGM.CTCF.gastroesophageal-sphincter 97 bp overlap
ChIP hESC_D7 GSE116862.CTCF.hESC_D7 71 bp overlap
ChIP heart_left-ventricle ENCSR544APK.CTCF.heart_left-ventricle 156 bp overlap
ChIP hepatocyte ENCFF263BLJ 156 bp overlap
ChIP hepatocyte ENCSR252QYR.CTCF.hepatocyte 156 bp overlap
ChIP hepatocyte ERP000395.CTCF.hepatocyte 156 bp overlap
ChIP keratinocyte ENCSR000ALJ.CTCF.keratinocyte 156 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 121 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 108 bp overlap
ChIP myoblast_skeletal_muscle ENCSR000ANE.CTCF.myoblast_skeletal_muscle 156 bp overlap
ChIP myotube ENCSR000ANS.CTCF.myotube 156 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 139 bp overlap
ChIP osteoblast ENCSR000APF.CTCF.osteoblast 156 bp overlap
ChIP skeletal muscle myoblast ENCFF813BQI 156 bp overlap
ESR1 10 datasets
ChIP MCF-7 GSE119057.ESR1.MCF-7 156 bp overlap
ChIP MCF-7_ER_t10 GSE119057.ESR1.MCF-7_ER_t10 156 bp overlap
ChIP MCF-7_ER_t20 GSE119057.ESR1.MCF-7_ER_t20 156 bp overlap
ChIP MCF-7_ER_t30 GSE119057.ESR1.MCF-7_ER_t30 156 bp overlap
ChIP MCF-7_ER_t40 GSE119057.ESR1.MCF-7_ER_t40 156 bp overlap
ChIP MCF-7_ER_t50 GSE119057.ESR1.MCF-7_ER_t50 156 bp overlap
ChIP MCF-7_ER_t60 GSE119057.ESR1.MCF-7_ER_t60 156 bp overlap
ChIP MCF-7_ER_t70 GSE119057.ESR1.MCF-7_ER_t70 150 bp overlap
ChIP MCF-7_ER_t80 GSE119057.ESR1.MCF-7_ER_t80 152 bp overlap
ChIP MCF-7_ER_t90 GSE119057.ESR1.MCF-7_ER_t90 156 bp overlap
FOXA1 1 dataset
ChIP MCF-7-TAMR-1_4OH-Tam GSE75201.FOXA1.MCF-7-TAMR-1_4OH-Tam 84 bp overlap
FOXL2 1 dataset
ChIP KGN_1512 GSE138496.FOXL2.KGN_1512 50 bp overlap
GATA2 1 dataset
ChIP ESF GSE108408.GATA2.ESF 126 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 63 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 147 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 136 bp overlap
KMT2C 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2C.BIN-67_lentivirus-SMARCA4 156 bp overlap
NR2F2 1 dataset
ChIP uterus_STROMA_ENDOMETRIUM GSE52008.NR2F2.uterus_STROMA_ENDOMETRIUM 130 bp overlap
RAD21 3 datasets
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 156 bp overlap
ChIP MCF-7 ERP000209.RAD21.MCF-7 150 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 156 bp overlap
SMARCA4 2 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 129 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 122 bp overlap
SMC3 2 datasets
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.SMC3.HeLa-Kyoto_PDS5-depleted 156 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.SMC3.HeLa-Kyoto_WAPL_PDS-depleted 141 bp overlap
STAG1 1 dataset
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 135 bp overlap
STAT3 2 datasets
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 140 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 126 bp overlap
ZBTB24 1 dataset
ChIP HCT-116 GSE111683.ZBTB24.HCT-116 73 bp overlap
ZNF501 1 dataset
ChIP HepG2 ENCFF879XZR 148 bp overlap
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