chr3 : 124,545,526 124,546,488
962 bp 30 TFs 2 linked genes
This 962 bp open chromatin element is linked to UMPS and ITGB5-AS1 and is bound by 30 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
UMPS 184.4 kb Distal Multiome
ITGB5-AS1 235.1 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:124,540,526 – 124,551,488
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
30 transcription factors
Source
Cell type
Arid3a 1 dataset
Motif DE_72h DE_72h-Arid3a_MA0151.1 6 bp overlap
BRD2 1 dataset
ChIP MV4-11_IBET151_500nM GSE120715.BRD2.MV4-11_IBET151_500nM 153 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 322 bp overlap
ESR2 1 dataset
Motif DE_72h DE_72h-ESR2_MA0258.2 15 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF018MKA 277 bp overlap
FIGLA 1 dataset
Motif DE_72h DE_72h-FIGLA_MA0820.2 6 bp overlap
FOXA1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 269 bp overlap
FOXA2 4 datasets
ChIP DE DE-FOXA2-1 720 bp overlap
ChIP DE DE-FOXA2-2 709 bp overlap
ChIP HepG2 ENCFF570ABM 213 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 226 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 938 bp overlap
ChIP DE DE-GATA4-2 877 bp overlap
ChIP foregut GSE117136.GATA4.foregut 655 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 388 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 685 bp overlap
ChIP DE DE-GATA6-2 912 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 333 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 603 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 508 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 538 bp overlap
ChIP foregut GSE117136.GATA6.foregut 634 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 759 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 296 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 377 bp overlap
MEIS1 1 dataset
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
POU5F1 1 dataset
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 270 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 794 bp overlap
SNAI2 1 dataset
Motif DE_72h DE_72h-SNAI2_MA0745.3 8 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 390 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 821 bp overlap
SPIB 1 dataset
Motif DE_72h DE_72h-SPIB_MA0081.3 13 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 226 bp overlap
TEAD4 1 dataset
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 223 bp overlap
TP53 1 dataset
ChIP IMR-90_APO GSE53491.TP53.IMR-90_APO 186 bp overlap
USF1 2 datasets
ChIP K-562 ENCSR000BKT.USF1.K-562 188 bp overlap
ChIP K562 ENCFF633EZB 265 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 215 bp overlap
ZEB1 1 dataset
Motif DE_72h DE_72h-ZEB1_MA0103.4 6 bp overlap