chr3 : 58,450,170 58,450,919
749 bp 20 TFs 4 linked genes
This 749 bp open chromatin element is linked to 4 target genes and is bound by 20 transcription factors.
Linked Genes
4 genes
Gene Expression Dist. to TSS Distance Link type
PDHB 16.8 kb Distal Multiome
KCTD6 41.5 kb Distal Multiome
PXK 117.7 kb Distal Multiome
ABHD6 213.1 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:58,445,170 – 58,455,919
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
20 transcription factors
Source
Cell type
E2F8 1 dataset
Motif DE_72h DE_72h-E2F8_MA0865.3 9 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 727 bp overlap
ChIP DE DE-FOXA2-2 697 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 534 bp overlap
ChIP DE DE-GATA4-2 686 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 484 bp overlap
ChIP DE DE-GATA6-2 592 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 515 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 462 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 343 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 255 bp overlap
HAND2 1 dataset
Motif DE_72h DE_72h-HAND2_MA1638.2 6 bp overlap
JUN 2 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 524 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 416 bp overlap
PAX6 1 dataset
Motif DE_72h DE_72h-PAX6_MA0069.1 14 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 344 bp overlap
Ptf1A 1 dataset
Motif DE_72h DE_72h-Ptf1A_MA1618.2 9 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 242 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 579 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 721 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 572 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 553 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 626 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 459 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 627 bp overlap
TAL1 1 dataset
ChIP PRIMA2 GSE33850.TAL1.PRIMA2 165 bp overlap
TBX19 1 dataset
Motif DE_72h DE_72h-TBX19_MA0804.2 17 bp overlap
TBXT 1 dataset
Motif DE_72h DE_72h-TBXT_MA0009.2 16 bp overlap
ZNF418 1 dataset
Motif DE_72h DE_72h-ZNF418_MA1980.1 15 bp overlap