chr3 : 46,571,510 46,572,202
692 bp 22 TFs 4 linked genes
This 692 bp open chromatin element is linked to 4 target genes and is bound by 22 transcription factors.
Linked Genes
4 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
LRRC2 5.2 kb Proximal Proximity
CRIPTO 5.6 kb Proximal Proximity
ENSG00000283877 8.9 kb Proximal Proximity
ALS2CL 121.8 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:46,566,510 – 46,577,202
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
22 transcription factors
Source
Cell type
BRD3 1 dataset
ChIP H-1_DE GSE126661.BRD3.H-1_DE 571 bp overlap
BRD4 1 dataset
ChIP K-562_IBET151_50nM GSE120715.BRD4.K-562_IBET151_50nM 177 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF031ISE 257 bp overlap
ChIP BLaER1 ENCFF274GAT 335 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 293 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 469 bp overlap
ChIP DE DE-FOXA2-2 518 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 614 bp overlap
ChIP DE DE-GATA4-2 624 bp overlap
ChIP foregut GSE117136.GATA4.foregut 505 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 485 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 346 bp overlap
GATA6 14 datasets
ChIP DE DE-GATA6-1 687 bp overlap
ChIP DE DE-GATA6-2 692 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 657 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 559 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 692 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 589 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 582 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 616 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 458 bp overlap
ChIP foregut GSE117136.GATA6.foregut 522 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 398 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 438 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 358 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 267 bp overlap
JUN 5 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 504 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 300 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 524 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 468 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 464 bp overlap
KDM1A 2 datasets
ChIP K-562_Wnt GSE117944.KDM1A.K-562_Wnt 172 bp overlap
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 377 bp overlap
LMO2 1 dataset
ChIP CCRF-CEM GSE33850.LMO2.CCRF-CEM 157 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 309 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 629 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 637 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 676 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 543 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 635 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 692 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 692 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 637 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 256 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 348 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 401 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 642 bp overlap
SPI1 2 datasets
ChIP K-562 ENCSR000BGW.SPI1.K-562 135 bp overlap
ChIP K-562_NABUT GSE74999.SPI1.K-562_NABUT 112 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 257 bp overlap
TCF12 1 dataset
ChIP Hep-G2 ENCSR000BJG.TCF12.Hep-G2 158 bp overlap
ZNF317 1 dataset
ChIP HEK293 GSE76494.ZNF317.HEK293 137 bp overlap