chr3 : 46,417,905 46,418,429
524 bp 24 TFs 2 linked genes
This 524 bp open chromatin element is linked to LRRC2 and ALS2CL and is bound by 24 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
LRRC2 162.0 kb Distal Multiome
ALS2CL 275.5 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:46,412,905 – 46,423,429
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
24 transcription factors
Source
Cell type
CEBPB 12 datasets
ChIP HeLa-S3 ENCFF722WEG 265 bp overlap
ChIP HepG2 ENCFF536NTI 221 bp overlap
ChIP IMR-90 ENCFF468UGY 251 bp overlap
ChIP Ishikawa ENCFF010USJ 261 bp overlap
ChIP K-562 ENCSR000EHE.CEBPB.K-562 410 bp overlap
ChIP K-562 ENCSR000BRQ.CEBPB.K-562 206 bp overlap
ChIP K562 ENCFF189VBN 271 bp overlap
ChIP K562 ENCFF194QGF 321 bp overlap
ChIP K562 ENCFF584CTB 264 bp overlap
ChIP K562 ENCFF584CTB 224 bp overlap
ChIP MV4-11 GSE88746.CEBPB.MV4-11 235 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 213 bp overlap
CEBPG 1 dataset
ChIP K562 ENCFF956TPS 438 bp overlap
Cebpa 12 datasets
ChIP BLaER1 ENCFF031ISE 386 bp overlap
ChIP BLaER1 ENCFF093OYK 418 bp overlap
ChIP BLaER1 ENCFF262VBH 301 bp overlap
ChIP BLaER1 ENCFF274GAT 417 bp overlap
ChIP BLaER1 ENCFF335XTP 297 bp overlap
ChIP BLaER1 ENCFF346MCV 374 bp overlap
ChIP BLaER1 ENCFF364PUR 524 bp overlap
ChIP BLaER1 ENCFF460KDD 167 bp overlap
ChIP BLaER1 ENCFF798NMV 350 bp overlap
ChIP BLaER1 ENCFF844FIP 354 bp overlap
ChIP BLaER1 ENCFF858JKM 390 bp overlap
ChIP BLaER1 ENCFF896HSY 324 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 56 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 226 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 307 bp overlap
ChIP DE DE-FOXA2-2 265 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 431 bp overlap
ChIP DE DE-GATA4-2 468 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 419 bp overlap
ChIP DE DE-GATA6-2 361 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 379 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 340 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 363 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 438 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 355 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 365 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 268 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 489 bp overlap
KDM4C 1 dataset
ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 65 bp overlap
MAX 2 datasets
ChIP H1 ENCFF914VQY 116 bp overlap
ChIP WTC11 ENCFF223QFY 353 bp overlap
MITF 1 dataset
ChIP 501-mel_K243Q GSE137522.MITF.501-mel_K243Q 52 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 524 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 524 bp overlap
RBM39 1 dataset
ChIP K-562 ENCSR764OXF.RBM39.K-562 127 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 180 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 524 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 473 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 368 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 374 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 478 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 412 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 524 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 453 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 169 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 201 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 524 bp overlap
TEAD4 2 datasets
ChIP H1 ENCFF778PAX 80 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 100 bp overlap
TP53 1 dataset
ChIP IMR-90_APO GSE53491.TP53.IMR-90_APO 160 bp overlap
ZNF3 1 dataset
ChIP K-562 ENCSR195QFV.ZNF3.K-562 75 bp overlap