chr3 : 27,354,683 – 27,355,059
376 bp 29 TFs 0 linked genes
This 376 bp open chromatin element has no linked target genes and is bound by 29 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:27,349,683 – 27,360,059
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
29 transcription factors
Source
Cell type
AR 47 datasets
ChIP 22Rv1_R1881 GSE80742.AR.22Rv1_R1881 262 bp overlap
ChIP 22Rv1_siARFL_R1881 GSE80742.AR.22Rv1_siARFL_R1881 261 bp overlap
ChIP DU145 GSE47987.AR.DU145 167 bp overlap
ChIP DU145_ARQ6540X GSE47987.AR.DU145_ARQ6540X 126 bp overlap
ChIP DUCAP_ANDROGEN GSE70679.AR.DUCAP_ANDROGEN 164 bp overlap
ChIP LNCaP GSE85558.AR.LNCaP 186 bp overlap
ChIP LNCaP ERP003503.AR.LNCaP 178 bp overlap
ChIP LNCaP ERP001226.AR.LNCaP 163 bp overlap
ChIP LNCaP GSE110655.AR.LNCaP 153 bp overlap
ChIP LNCaP GSE117430.AR.LNCaP 136 bp overlap
ChIP LNCaP-clone-FGC_DHT-ABBV-075 GSE118247.AR.LNCaP-clone-FGC_DHT-ABBV-075 269 bp overlap
ChIP LNCaP_1F5_SIFOXA1 GSE30623.AR.LNCaP_1F5_SIFOXA1 202 bp overlap
ChIP LNCaP_DSG GSE114737.AR.LNCaP_DSG 176 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 202 bp overlap
ChIP LNCaP_SHCTR_DHT GSE62492.AR.LNCaP_SHCTR_DHT 163 bp overlap
ChIP LNCaP_SHFOXA1_R1881 GSE37345.AR.LNCaP_SHFOXA1_R1881 187 bp overlap
ChIP LNCaP_SHFOXP1_DHT GSE62492.AR.LNCaP_SHFOXP1_DHT 202 bp overlap
ChIP LNCaP_Talen_DHT GSE89938.AR.LNCaP_Talen_DHT 192 bp overlap
ChIP LNCaP_androgen-Y_hypoxia-N GSE114732.AR.LNCaP_androgen-Y_hypoxia-N 199 bp overlap
ChIP LNCaP_androgen-Y_hypoxia-Y GSE114732.AR.LNCaP_androgen-Y_hypoxia-Y 196 bp overlap
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 224 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 331 bp overlap
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 274 bp overlap
ChIP LTAD_siControl GSE94577.AR.LTAD_siControl 158 bp overlap
ChIP MDA-MB-453_R1881_SIPIAS1 GSE70161.AR.MDA-MB-453_R1881_SIPIAS1 118 bp overlap
ChIP PC-3_R1881 GSE54110.AR.PC-3_R1881 254 bp overlap
ChIP VCaP_DHAT_18H GSE28950.AR.VCaP_DHAT_18H 196 bp overlap
ChIP VCaP_DHAT_2H GSE28950.AR.VCaP_DHAT_2H 192 bp overlap
ChIP VCaP_DHT24H GSE58428.AR.VCaP_DHT24H 376 bp overlap
ChIP VCaP_DHT24H_SHFOXA1 GSE58428.AR.VCaP_DHT24H_SHFOXA1 376 bp overlap
ChIP VCaP_DHT24H_SHRUNX1 GSE58428.AR.VCaP_DHT24H_SHRUNX1 376 bp overlap
ChIP VCaP_R1881 GSE32892.AR.VCaP_R1881 144 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 168 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 183 bp overlap
ChIP VCaP_SH1_DHT GSE79128.AR.VCaP_SH1_DHT 230 bp overlap
ChIP VCaP_SH2_DHT GSE79128.AR.VCaP_SH2_DHT 231 bp overlap
ChIP VCaP_SH3_DHT GSE79128.AR.VCaP_SH3_DHT 193 bp overlap
ChIP breast-cancer_ENOB GSE128018.AR.breast-cancer_ENOB 60 bp overlap
ChIP breast-cancer_ENOB-2852 GSE128018.AR.breast-cancer_ENOB-2852 261 bp overlap
ChIP breast-cancer_ENOB-2854 GSE128018.AR.breast-cancer_ENOB-2854 346 bp overlap
ChIP breast_tumor_Male_10 GSE104399.AR.breast_tumor_Male_10 245 bp overlap
ChIP breast_tumor_Male_26 GSE104399.AR.breast_tumor_Male_26 250 bp overlap
ChIP prostate-cancer_C4-2-CON GSE136128.AR.prostate-cancer_C4-2-CON 189 bp overlap
ChIP prostate-cancer_PDX_167 GSE130408.AR.prostate-cancer_PDX_167 224 bp overlap
ChIP prostate-cancer_PDX_189-4 GSE130408.AR.prostate-cancer_PDX_189-4 261 bp overlap
ChIP prostate-cancer_PDX_81 GSE130408.AR.prostate-cancer_PDX_81 255 bp overlap
ChIP prostate_DHT GSE61838.AR.prostate_DHT 178 bp overlap
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 234 bp overlap
BRD4 2 datasets
ChIP HAP1 GSE108387.BRD4.HAP1 376 bp overlap
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 263 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 133 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 376 bp overlap
DUX4 2 datasets
ChIP HEK293 GSE75791.DUX4.HEK293 110 bp overlap
ChIP WA01 GSE94322.DUX4.WA01 148 bp overlap
ERG 1 dataset
ChIP VCaP_R1881 GSE49091.ERG.VCaP_R1881 162 bp overlap
ESR1 8 datasets
ChIP T-47D_PROG GSE68355.ESR1.T-47D_PROG 242 bp overlap
ChIP T-47D_R5020 GSE68355.ESR1.T-47D_R5020 223 bp overlap
ChIP breast_tumor_Male_10 GSE104399.ESR1.breast_tumor_Male_10 307 bp overlap
ChIP breast_tumor_Male_11 GSE104399.ESR1.breast_tumor_Male_11 132 bp overlap
ChIP breast_tumor_Male_15 GSE104399.ESR1.breast_tumor_Male_15 115 bp overlap
ChIP breast_tumor_Male_19 GSE104399.ESR1.breast_tumor_Male_19 376 bp overlap
ChIP breast_tumor_Male_20 GSE104399.ESR1.breast_tumor_Male_20 331 bp overlap
ChIP breast_tumor_Male_26 GSE104399.ESR1.breast_tumor_Male_26 243 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 269 bp overlap
FOXA1 6 datasets
ChIP LNCaP_R1881 GSE69043.FOXA1.LNCaP_R1881 159 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.FOXA1.LNCaP_SHGATA2_R1881 170 bp overlap
ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 51 bp overlap
ChIP breast-cancer_ENOB-2852 GSE128018.FOXA1.breast-cancer_ENOB-2852 272 bp overlap
ChIP breast_tumor_Male_19 GSE104399.FOXA1.breast_tumor_Male_19 179 bp overlap
ChIP prostate-cancer_PDX_189-3 GSE130408.FOXA1.prostate-cancer_PDX_189-3 80 bp overlap
HDAC2 1 dataset
ChIP VCaP_DHAT_2H GSE28950.HDAC2.VCaP_DHAT_2H 64 bp overlap
HNF4G 2 datasets
ChIP 22Rv1 GSE85558.HNF4G.22Rv1 206 bp overlap
ChIP 22Rv1_Dox GSE85558.HNF4G.22Rv1_Dox 212 bp overlap
HOXB13 3 datasets
ChIP prostate-cancer_PDX_167 GSE130408.HOXB13.prostate-cancer_PDX_167 93 bp overlap
ChIP prostate-cancer_PDX_189-4 GSE130408.HOXB13.prostate-cancer_PDX_189-4 105 bp overlap
ChIP prostate-cancer_PDX_189-4 GSE130408.HOXB13.prostate-cancer_PDX_189-4 65 bp overlap
KLF4 1 dataset
ChIP HAP1 GSE130417.KLF4.HAP1 94 bp overlap
MED1 1 dataset
ChIP VCaP_R1881 GSE148358.MED1.VCaP_R1881 212 bp overlap
NANOG 1 dataset
ChIP hESC GSE18292.NANOG.hESC 85 bp overlap
NR3C1 18 datasets
ChIP A-549 ENCSR000BHF.NR3C1.A-549 293 bp overlap
ChIP A-549 ENCSR000BJR.NR3C1.A-549 175 bp overlap
ChIP A-549 ENCSR000BHG.NR3C1.A-549 143 bp overlap
ChIP BEAS-2B_DEX GSE125623.NR3C1.BEAS-2B_DEX 245 bp overlap
ChIP HCC1937 GSE152203.NR3C1.HCC1937 202 bp overlap
ChIP HeLa-B2_P65KD_TA_TNFA GSE24518.NR3C1.HeLa-B2_P65KD_TA_TNFA 82 bp overlap
ChIP HeLa-B2_TA GSE24518.NR3C1.HeLa-B2_TA 115 bp overlap
ChIP IMR-90 ERP007093.NR3C1.IMR-90 123 bp overlap
ChIP IMR-90_GLUCC ERP007081.NR3C1.IMR-90_GLUCC 134 bp overlap
ChIP LNCaP_1F5_SIFOXA1 GSE30623.NR3C1.LNCaP_1F5_SIFOXA1 155 bp overlap
ChIP MCF-10A_DEX_20min GSE102355.NR3C1.MCF-10A_DEX_20min 283 bp overlap
ChIP MCF-10A_DEX_60min GSE102355.NR3C1.MCF-10A_DEX_60min 330 bp overlap
ChIP MCF-10A_EGF_DEX_20min GSE102355.NR3C1.MCF-10A_EGF_DEX_20min 231 bp overlap
ChIP MCF-10A_EGF_DEX_60min GSE102355.NR3C1.MCF-10A_EGF_DEX_60min 229 bp overlap
ChIP SUM159PT GSE152203.NR3C1.SUM159PT 190 bp overlap
ChIP T47D-A1-2_Dex GSE112491.NR3C1.T47D-A1-2_Dex 376 bp overlap
ChIP U2OS_GLUCC ERP007081.NR3C1.U2OS_GLUCC 77 bp overlap
ChIP U2OS_SHHIC5 GSE65847.NR3C1.U2OS_SHHIC5 146 bp overlap
PAX3-FOXO1 1 dataset
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 233 bp overlap
PGR 13 datasets
ChIP AB32 GSE31129.PGR.AB32 295 bp overlap
ChIP T-47D GSE31129.PGR.T-47D 322 bp overlap
ChIP T-47D-A_E2_R5020 GSE80358.PGR.T-47D-A_E2_R5020 269 bp overlap
ChIP T-47D_E2PG GSE68356.PGR.T-47D_E2PG 221 bp overlap
ChIP T-47D_PG GSE68356.PGR.T-47D_PG 234 bp overlap
ChIP T-47D_PROG GSE68355.PGR.T-47D_PROG 270 bp overlap
ChIP T-47D_R5020 GSE68355.PGR.T-47D_R5020 270 bp overlap
ChIP T-47D_R5020-A1 GSE126859.PGR.T-47D_R5020-A1 224 bp overlap
ChIP T-47D_R5020-MTVL GSE126859.PGR.T-47D_R5020-MTVL 255 bp overlap
ChIP T-47D_progesterone GSE132649.PGR.T-47D_progesterone 204 bp overlap
ChIP T-47D_progesterone_siCEBPA GSE132649.PGR.T-47D_progesterone_siCEBPA 248 bp overlap
ChIP T-47D_progesterone_siCtrl GSE132649.PGR.T-47D_progesterone_siCtrl 251 bp overlap
ChIP breast_tumor_Male_26 GSE104399.PGR.breast_tumor_Male_26 290 bp overlap
POLR2A 1 dataset
ChIP Panc1 ENCFF290KAB 233 bp overlap
POU5F1 1 dataset
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 376 bp overlap
RAD21 4 datasets
ChIP HAP1 GSE126634.RAD21.HAP1 230 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 196 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 303 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 202 bp overlap
RUNX1 1 dataset
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 376 bp overlap
SMAD2-3 1 dataset
ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 376 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 172 bp overlap
STAT3 3 datasets
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 231 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 252 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 165 bp overlap
TEAD4 1 dataset
ChIP T-47D_Veh GSE125594.TEAD4.T-47D_Veh 183 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 215 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 269 bp overlap
ZNF786 1 dataset
ChIP HEK293T GSE78099.ZNF786.HEK293T 162 bp overlap
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