chr2 : 240,670,022 240,670,734
712 bp 19 TFs 6 linked genes
This 712 bp open chromatin element is linked to 6 target genes and is bound by 19 transcription factors.
Linked Genes
6 genes
Gene Expression Dist. to TSS Distance Link type
CAPN10 83.6 kb Distal Multiome
CAPN10-DT 83.7 kb Distal Multiome
RNPEPL1 101.9 kb Distal Multiome
ANKMY1 112.4 kb Distal Multiome
KIF1A 149.8 kb Distal Multiome
GPC1 234.7 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:240,665,022 – 240,675,734
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
19 transcription factors
Source
Cell type
ATF2 1 dataset
ChIP Hep-G2 ENCSR047BUZ.ATF2.Hep-G2 112 bp overlap
ATF7 4 datasets
ChIP Hep-G2 ENCSR545FXC.ATF7.Hep-G2 89 bp overlap
ChIP HepG2 ENCFF470FKK 155 bp overlap
ChIP MCF-7 ENCFF578WKB 161 bp overlap
ChIP MCF-7 ENCSR866QPZ.ATF7.MCF-7 71 bp overlap
BRD3 1 dataset
ChIP H-1_DE GSE126661.BRD3.H-1_DE 62 bp overlap
BRD4 1 dataset
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 196 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF274GAT 221 bp overlap
ChIP BLaER1 ENCFF896HSY 203 bp overlap
ESR1 1 dataset
ChIP U2OS_E2 GSE26110.ESR1.U2OS_E2 140 bp overlap
EZH2 9 datasets
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 70 bp overlap
ChIP HepG2 ENCFF912EIW 401 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 77 bp overlap
ChIP T98G GSE112240.EZH2.T98G 241 bp overlap
ChIP dermal-fibroblast_Preneoplastic GSE126396.EZH2.dermal-fibroblast_Preneoplastic 121 bp overlap
ChIP dermal-fibroblast_Transformed GSE126396.EZH2.dermal-fibroblast_Transformed 177 bp overlap
ChIP dermal-fibroblast_Transformed GSE126396.EZH2.dermal-fibroblast_Transformed 138 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 96 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 357 bp overlap
EZH2_phosphoT487 2 datasets
ChIP neuron_bipolar_doxy_4d ENCSR886KKK.EZH2_phosphoT487.neuron_bipolar_doxy_4d 277 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR886KKK.EZH2_phosphoT487.neuron_bipolar_doxy_4d 324 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 585 bp overlap
ChIP DE DE-FOXA2-1 55 bp overlap
ChIP DE DE-FOXA2-2 712 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 640 bp overlap
ChIP DE DE-GATA4-2 682 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 699 bp overlap
ChIP DE DE-GATA6-2 712 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 522 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 412 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 560 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 596 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 460 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 183 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 712 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 703 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 480 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 292 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 589 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 485 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 712 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 712 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 169 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 213 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 233 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 500 bp overlap
SUZ12 2 datasets
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 142 bp overlap
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 61 bp overlap