chr1 : 34,774,067 34,774,642
575 bp 20 TFs 5 linked genes
This 575 bp open chromatin element is linked to 5 target genes and is bound by 20 transcription factors.
Linked Genes
5 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
GJB3 6.6 kb Proximal Proximity
GJA4 18.7 kb Distal Multiome
SMIM12 85.5 kb Distal Multiome
TMEM35B 211.1 kb Distal Multiome
ZMYM6 257.6 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:34,769,067 – 34,779,642
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
20 transcription factors
Source
Cell type
AR 15 datasets
ChIP LNCaP GSE80256.AR.LNCaP 211 bp overlap
ChIP LNCaP_1F5_SIFOXA1 GSE30623.AR.LNCaP_1F5_SIFOXA1 150 bp overlap
ChIP LNCaP_DHT GSE125245.AR.LNCaP_DHT 133 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 213 bp overlap
ChIP LNCaP_SHFOXA1_R1881 GSE37345.AR.LNCaP_SHFOXA1_R1881 145 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 107 bp overlap
ChIP LNCaP_Talen_DHT GSE89938.AR.LNCaP_Talen_DHT 202 bp overlap
ChIP LTAD_siControl GSE94577.AR.LTAD_siControl 137 bp overlap
ChIP VCaP_DHAT_2H GSE28950.AR.VCaP_DHAT_2H 251 bp overlap
ChIP VCaP_DHTTHZ1 GSE125245.AR.VCaP_DHTTHZ1 178 bp overlap
ChIP VCaP_R1881 GSE32892.AR.VCaP_R1881 146 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 189 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 221 bp overlap
ChIP VCaP_SH2_DHT GSE79128.AR.VCaP_SH2_DHT 275 bp overlap
ChIP VCaP_SH2_R1881 GSE79128.AR.VCaP_SH2_R1881 272 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 292 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 220 bp overlap
ESR1 1 dataset
ChIP MCF-7_Veh_OA GSE93510.ESR1.MCF-7_Veh_OA 327 bp overlap
EZH2 1 dataset
ChIP THP-1 GSE135024.EZH2.THP-1 220 bp overlap
FOXA2 3 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 260 bp overlap
ChIP DE DE-FOXA2-1 399 bp overlap
ChIP DE DE-FOXA2-2 328 bp overlap
GATA2 2 datasets
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 191 bp overlap
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 385 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 436 bp overlap
ChIP DE DE-GATA4-2 480 bp overlap
ChIP foregut GSE117136.GATA4.foregut 403 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 321 bp overlap
GATA6 9 datasets
ChIP AGS GSE51936.GATA6.AGS 140 bp overlap
ChIP DE DE-GATA6-1 421 bp overlap
ChIP DE DE-GATA6-2 479 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 241 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 417 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 362 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 407 bp overlap
ChIP foregut GSE117136.GATA6.foregut 376 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 267 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 148 bp overlap
RELA 1 dataset
ChIP MCF-7_Veh GSE67295.RELA.MCF-7_Veh 166 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 290 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 542 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 421 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 575 bp overlap
SMAD3 2 datasets
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 147 bp overlap
ChIP endoderm GSE29422.SMAD3.endoderm 188 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 314 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 343 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 499 bp overlap
SPI1 1 dataset
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 145 bp overlap
USF2 1 dataset
ChIP K-562 GSE111469.USF2.K-562 219 bp overlap