chr19:52,558,780–52,559,576

chr19 : 52,558,780 – 52,559,576

796 bp 17 TFs 17 linked genes

This 796 bp open chromatin element is linked to 17 target genes and is bound by 17 transcription factors.

Linked Genes

17 genes

Gene	Expression	Dist. to TSS	Distance	Link type
ENSG00000289102		763 bp	At TSS	Proximity
ZNF701		11.1 kb	Distal	Multiome
ZNF808		23.2 kb	Distal	Multiome
ENSG00000290073		42.1 kb	Distal	Multiome
ZNF578		105.6 kb	Distal	Multiome
ENSG00000269825		131.4 kb	Distal	Multiome
ZNF83		131.4 kb	Distal	Multiome
ZNF528		161.3 kb	Distal	Multiome
ZNF528-AS1		161.4 kb	Distal	Multiome
ZNF611		175.9 kb	Distal	Multiome
ZNF880		189.2 kb	Distal	Multiome
ZNF610		222.9 kb	Distal	Multiome
ZNF600		227.7 kb	Distal	Multiome
ZNF480		262.0 kb	Distal	Multiome
ZNF28		262.5 kb	Distal	Multiome
ZNF766		289.6 kb	Distal	Multiome
ZNF468		298.5 kb	Distal	Multiome

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

17 transcription factors

ChIP DUCAP_ANDROGEN GSE70679.AR.DUCAP_ANDROGEN 119 bp overlap

ChIP LNCaP_SHCTR_DHT GSE62492.AR.LNCaP_SHCTR_DHT 117 bp overlap

ChIP LTAD_siControl GSE94577.AR.LTAD_siControl 195 bp overlap

ChIP VCaP_DHAT_18H GSE28950.AR.VCaP_DHAT_18H 158 bp overlap

ChIP VCaP_DHAT_2H GSE28950.AR.VCaP_DHAT_2H 277 bp overlap

ChIP VCaP_DHT24H GSE58428.AR.VCaP_DHT24H 186 bp overlap

ChIP VCaP_DHT24H_SHFOXA1 GSE58428.AR.VCaP_DHT24H_SHFOXA1 192 bp overlap

ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 427 bp overlap

ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 307 bp overlap

ChIP VCaP_R1881 GSE32892.AR.VCaP_R1881 184 bp overlap

ChIP VCaP_R1881_1C30 GSE32892.AR.VCaP_R1881_1C30 138 bp overlap

ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 149 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 791 bp overlap

ChIP DE DE-FOXA2-2 795 bp overlap

GATA4 2 datasets

ChIP DE DE-GATA4-1 796 bp overlap

ChIP DE DE-GATA4-2 796 bp overlap

GATA6 4 datasets

ChIP DE DE-GATA6-1 646 bp overlap

ChIP DE DE-GATA6-2 796 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 465 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 282 bp overlap

ChIP H1 ENCFF914VQY 280 bp overlap

ChIP WA01 ENCSR000EUP.MAX.WA01 157 bp overlap

ChIP WTC11 ENCFF223QFY 482 bp overlap

ChIP VCaP_R1881 GSE148358.MED1.VCaP_R1881 62 bp overlap

NANOG 2 datasets

ChIP WA01 ENCSR000BMT.NANOG.WA01 117 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 177 bp overlap

ChIP WTC11 ENCFF634NAO 245 bp overlap

POLR2A 2 datasets

ChIP H1 ENCFF566JSR 506 bp overlap

ChIP prostate gland ENCFF881OMH 376 bp overlap

POU5F1 1 dataset

ChIP DE_D1 DED1-OCT4_Batch_II 616 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 408 bp overlap

SMAD2_3 5 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 482 bp overlap

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 512 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 593 bp overlap

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 461 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 658 bp overlap

SOX17 1 dataset

ChIP DE_D2 DED2-SOX17_Batch_II 427 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 679 bp overlap

ChIP H1 ENCFF090WVU 241 bp overlap

ChIP WTC11 ENCFF139JAW 417 bp overlap

ZNF143 1 dataset

ChIP WTC11 ENCFF249JUK 485 bp overlap