chr18 : 52,069,219 52,069,479
260 bp 42 TFs 0 linked genes
This 260 bp open chromatin element has no linked target genes and is bound by 42 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr18:52,064,219 – 52,074,479
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
42 transcription factors
Source
Cell type
CDX2 1 dataset
ChIP LS180_125 GSE31939.CDX2.LS180_125 254 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 231 bp overlap
CTCF 1 dataset
Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap
CTNNB1 3 datasets
ChIP LS180_125 GSE31939.CTNNB1.LS180_125 130 bp overlap
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 229 bp overlap
ChIP hiPSC_TT-neg_D2 GSE132532.CTNNB1.hiPSC_TT-neg_D2 178 bp overlap
FOXA1 2 datasets
ChIP 22Rv1_CST_Crispr-70 GSE123618.FOXA1.22Rv1_CST_Crispr-70 104 bp overlap
ChIP LS180 GSE140533.FOXA1.LS180 171 bp overlap
GATA6 5 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 227 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 260 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 184 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 260 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 228 bp overlap
HOXB4 1 dataset
Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap
HOXC4 1 dataset
Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap
HOXD4 1 dataset
Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap
IRF7 1 dataset
Motif DE_12h DE_12h-IRF7_MA0772.2 13 bp overlap
LEF1 1 dataset
ChIP hESC_WNT3A GSE64758.LEF1.hESC_WNT3A 222 bp overlap
MTA2 1 dataset
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 213 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCFF065NZG 226 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 140 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 260 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 252 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 202 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 260 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 260 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 260 bp overlap
ChIP hESC GSE18292.NANOG.hESC 194 bp overlap
ChIP hESC GSE20650.NANOG.hESC 143 bp overlap
NCOA1 1 dataset
ChIP LS180_125 GSE39277.NCOA1.LS180_125 103 bp overlap
NCOR2 1 dataset
ChIP LS180_125 GSE39277.NCOR2.LS180_125 107 bp overlap
NIPBL 1 dataset
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 210 bp overlap
NR1I2 1 dataset
Motif DE_12h DE_12h-NR1I2_MA1533.2 15 bp overlap
POU5F1 6 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 227 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 260 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 155 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 235 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 178 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 260 bp overlap
POU6F1 1 dataset
Motif DE_12h DE_12h-POU6F1_MA1549.2 7 bp overlap
POU6F2 1 dataset
Motif DE_12h DE_12h-POU6F2_MA0793.2 9 bp overlap
Prdm4 1 dataset
Motif DE_12h DE_12h-Prdm4_MA1647.3 11 bp overlap
RARA 1 dataset
Motif DE_12h DE_12h-RARA_MA0729.1 18 bp overlap
RUNX3 1 dataset
Motif DE_12h DE_12h-RUNX3_MA0684.3 8 bp overlap
RXR 1 dataset
ChIP LS180_125 GSE31939.RXR.LS180_125 207 bp overlap
SIX2 3 datasets
ChIP HEK GSE73865.SIX2.HEK 260 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 208 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 250 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 177 bp overlap
SMARCA4 1 dataset
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 234 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 216 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 221 bp overlap
SOX2 3 datasets
ChIP LK2_DNp63 GSE137459.SOX2.LK2_DNp63 204 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 183 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 171 bp overlap
TBX21 1 dataset
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 74 bp overlap
TCF4 1 dataset
ChIP LS180_125 GSE31939.TCF4.LS180_125 132 bp overlap
VDR 1 dataset
ChIP LS180_125 GSE31939.VDR.LS180_125 260 bp overlap
ZGPAT 1 dataset
ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 161 bp overlap
ZNF324 1 dataset
Motif DE_12h DE_12h-ZNF324_MA1977.2 14 bp overlap