chr18 : 7,256,801 7,257,280
479 bp 20 TFs 2 linked genes
This 479 bp open chromatin element is linked to LAMA1 and PTPRM and is bound by 20 transcription factors.
Linked Genes
2 genes
Link type
Gene Expression Dist. to TSS Distance Link type
LAMA1 139.3 kb Distal Multiome
PTPRM 310.2 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr18:7,251,801 – 7,262,280
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
20 transcription factors
Source
Cell type
BRD4 4 datasets
ChIP NMC24335 GSE96775.BRD4.NMC24335 479 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 343 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 151 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 67 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 288 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 285 bp overlap
EZH2 3 datasets
ChIP PC-9 ENCFF634ONR 216 bp overlap
ChIP PC-9 ENCSR793USK.EZH2.PC-9 370 bp overlap
ChIP neural progenitor cell ENCFF018MKA 433 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 316 bp overlap
ChIP DE DE-FOXA2-2 311 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 458 bp overlap
ChIP DE DE-GATA4-2 473 bp overlap
ChIP foregut GSE117136.GATA4.foregut 260 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 468 bp overlap
ChIP DE DE-GATA6-2 452 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 357 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 390 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 479 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 479 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 467 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 462 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 416 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 360 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 319 bp overlap
NUTM1 1 dataset
ChIP NMC24335 GSE96775.NUTM1.NMC24335 479 bp overlap
POLR2A 1 dataset
ChIP gastrocnemius medialis ENCFF081DTE 63 bp overlap
RBM39 2 datasets
ChIP K-562 ENCSR764OXF.RBM39.K-562 133 bp overlap
ChIP K-562 GSE120104.RBM39.K-562 133 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 316 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 408 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 252 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 421 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 353 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 374 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 438 bp overlap
SOX2 2 datasets
ChIP HCC95 GSE137459.SOX2.HCC95 196 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 267 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 288 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 193 bp overlap
TFAP2C 1 dataset
ChIP HCC1954 GSE126897.TFAP2C.HCC1954 151 bp overlap
ZNF532 1 dataset
ChIP NMC24335 GSE96775.ZNF532.NMC24335 296 bp overlap