chr18 : 653,638 653,917
279 bp 21 TFs 3 linked genes
This 279 bp open chromatin element is linked to ENSG00000263727, TYMSOS, and TYMS and is bound by 21 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
ENSG00000263727 3.3 kb Proximal Proximity
TYMSOS 3.7 kb Proximal Proximity
TYMS 3.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr18:648,638 – 658,917
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
21 transcription factors
Source
Cell type
BRF1 1 dataset
ChIP H9_Activin GSE94418.BRF1.H9_Activin 119 bp overlap
CTCF 19 datasets
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 205 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 113 bp overlap
ChIP HL-60 ERP008568.CTCF.HL-60 182 bp overlap
ChIP HL-60 GSE131577.CTCF.HL-60 182 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.CTCF.HeLa-Kyoto_PDS5-depleted 239 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 241 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 83 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.CTCF.K-562_enCRISPRi-KL 111 bp overlap
ChIP Kasumi-1_ctrl GSE121280.CTCF.Kasumi-1_ctrl 154 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 177 bp overlap
ChIP MCF-7 ENCFF162GNE 164 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 210 bp overlap
ChIP MCF-7 ENCSR000AHD.CTCF.MCF-7 141 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 192 bp overlap
ChIP MCF-7 ENCSR000DMS.CTCF.MCF-7 129 bp overlap
ChIP THP-1_Pam3csk-030m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-030m-Flavo-000m 200 bp overlap
ChIP endodermal cell ENCFF471YCZ 275 bp overlap
ChIP leukemia_CEBPA-96h GSE142161.CTCF.leukemia_CEBPA-96h 217 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 186 bp overlap
CTCF_s 1 dataset
ChIP HeLa-S3_biotin GSE108869.CTCF_s.HeLa-S3_biotin 122 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 212 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 279 bp overlap
ChIP DE DE-FOXA2-2 279 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 279 bp overlap
ChIP DE DE-GATA4-2 279 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 279 bp overlap
ChIP DE DE-GATA6-2 279 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 279 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 261 bp overlap
GRHL2 1 dataset
ChIP LNCaP GSE80256.GRHL2.LNCaP 100 bp overlap
KDM1A 1 dataset
ChIP Kasumi-1_GSK690 GSE71739.KDM1A.Kasumi-1_GSK690 56 bp overlap
PML 1 dataset
ChIP K-562 ENCSR000BQY.PML.K-562 158 bp overlap
POLR2A 2 datasets
ChIP HepG2 ENCFF736SLT 279 bp overlap
ChIP HepG2 ENCFF736SLT 159 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 276 bp overlap
RAD21 2 datasets
ChIP MCF-7 GSE72082.RAD21.MCF-7 121 bp overlap
ChIP MCF-7 ENCSR000BTQ.RAD21.MCF-7 116 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 279 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 220 bp overlap
SPI1 16 datasets
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 203 bp overlap
ChIP CTV-1_delA GSE128835.SPI1.CTV-1_delA 196 bp overlap
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 195 bp overlap
ChIP CTV-1_delQA GSE128835.SPI1.CTV-1_delQA 232 bp overlap
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 152 bp overlap
ChIP EM-3 GSE128834.SPI1.EM-3 158 bp overlap
ChIP HL-60 ENCFF645GBT 222 bp overlap
ChIP K-562 ENCSR000BGW.SPI1.K-562 155 bp overlap
ChIP K562 ENCFF410ORC 187 bp overlap
ChIP KG-1 GSE128834.SPI1.KG-1 162 bp overlap
ChIP Kasumi-1_SICTR GSE60130.SPI1.Kasumi-1_SICTR 211 bp overlap
ChIP Kasumi-1_SIRUNX1ETO GSE60130.SPI1.Kasumi-1_SIRUNX1ETO 129 bp overlap
ChIP THP-1 GSE128834.SPI1.THP-1 126 bp overlap
ChIP U-937 GSE128834.SPI1.U-937 203 bp overlap
ChIP primary-neutrophil_donorE GSE128834.SPI1.primary-neutrophil_donorE 166 bp overlap
ChIP primary-neutrophil_donorF GSE128834.SPI1.primary-neutrophil_donorF 106 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 220 bp overlap
ZNF24 7 datasets
ChIP K-562 ENCSR099NCH.ZNF24.K-562 211 bp overlap
ChIP K-562 ENCSR695EQB.ZNF24.K-562 188 bp overlap
ChIP K-562 ENCSR385AHH.ZNF24.K-562 89 bp overlap
ChIP K562 ENCFF497GLV 178 bp overlap
ChIP K562 ENCFF615YYW 146 bp overlap
ChIP K562 ENCFF781QQQ 144 bp overlap
ChIP K562 ENCFF877JCX 153 bp overlap
ZSCAN16 1 dataset
ChIP HEK293 GSE76494.ZSCAN16.HEK293 112 bp overlap