chr16 : 54,363,804 54,364,240
436 bp 27 TFs 1 linked gene
This 436 bp open chromatin element is linked to LINC02140 and is bound by 27 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LINC02140 6.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr16:54,358,804 – 54,369,240
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
27 transcription factors
Source
Cell type
BRD3 1 dataset
ChIP K-562_DMSO-IFNG GSE138084.BRD3.K-562_DMSO-IFNG 248 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 145 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF335XTP 204 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 396 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF018MKA 436 bp overlap
GATA2 2 datasets
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 282 bp overlap
ChIP hiPSC_SLC9ebs GSE107639.GATA2.hiPSC_SLC9ebs 247 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 436 bp overlap
ChIP DE DE-GATA4-2 436 bp overlap
ChIP foregut GSE117136.GATA4.foregut 255 bp overlap
GATA6 12 datasets
ChIP DE DE-GATA6-1 436 bp overlap
ChIP DE DE-GATA6-2 436 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 436 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 436 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 436 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 436 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 436 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 436 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 436 bp overlap
ChIP foregut GSE117136.GATA6.foregut 436 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 436 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 236 bp overlap
HOXA3 1 dataset
ChIP Hep-G2 ENCSR999JKC.HOXA3.Hep-G2 180 bp overlap
JUN 1 dataset
ChIP DE_D1 S13-DE-d1-JUN-exp1 137 bp overlap
MYB 1 dataset
ChIP THP-1 GSE90769.MYB.THP-1 238 bp overlap
MYC 1 dataset
ChIP P493-6_0HR GSE125863.MYC.P493-6_0HR 296 bp overlap
MYOG 1 dataset
ChIP RH30_DMSO GSE85169.MYOG.RH30_DMSO 205 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 231 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 172 bp overlap
RARA 3 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 249 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 243 bp overlap
ChIP hiPSC_D5 GSE132532.RARA.hiPSC_D5 242 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 436 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 436 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 436 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 436 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 410 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 388 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 436 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 436 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 152 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 364 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 280 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 402 bp overlap
SPI1 13 datasets
ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 245 bp overlap
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 335 bp overlap
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 188 bp overlap
ChIP CTV-1_delQA GSE128835.SPI1.CTV-1_delQA 218 bp overlap
ChIP EM-3 GSE128834.SPI1.EM-3 207 bp overlap
ChIP HL-60 ENCFF645GBT 271 bp overlap
ChIP K-562 ENCSR000BGW.SPI1.K-562 137 bp overlap
ChIP KG-1 GSE128834.SPI1.KG-1 201 bp overlap
ChIP Kasumi-1_SICTR GSE60130.SPI1.Kasumi-1_SICTR 148 bp overlap
ChIP Kasumi-1_SIRUNX1ETO GSE60130.SPI1.Kasumi-1_SIRUNX1ETO 247 bp overlap
ChIP NB4 GSE128834.SPI1.NB4 258 bp overlap
ChIP THP-1 GSE128834.SPI1.THP-1 192 bp overlap
ChIP U-937 GSE128834.SPI1.U-937 198 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 259 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 420 bp overlap
TAL1 1 dataset
ChIP CHRF28811 ERP008568.TAL1.CHRF28811 341 bp overlap