chr16 : 54,211,232 54,211,931
699 bp 25 TFs 2 linked genes
This 699 bp open chromatin element is linked to IRX3 and CRNDE and is bound by 25 transcription factors.
Linked Genes
2 genes
Link type
Gene Expression Dist. to TSS Distance Link type
IRX3 75.2 kb Distal Multiome
CRNDE 717.6 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr16:54,206,232 – 54,216,931
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
25 transcription factors
Source
Cell type
AR 1 dataset
ChIP prostate_P27 GSE130408.AR.prostate_P27 189 bp overlap
BAP1 1 dataset
ChIP NCI-H1963_shASXL3 GSE145028.BAP1.NCI-H1963_shASXL3 274 bp overlap
BRD4 2 datasets
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 185 bp overlap
ChIP MOLM-14_DMSO GSE65138.BRD4.MOLM-14_DMSO 203 bp overlap
EOMES 2 datasets
ChIP hESC GSE26097.EOMES.hESC 216 bp overlap
ChIP hESC GSE26097.EOMES.hESC 227 bp overlap
EZH2 2 datasets
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 699 bp overlap
ChIP HCT-116 ENCSR046HGP.EZH2.HCT-116 149 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 699 bp overlap
ChIP DE DE-FOXA2-2 699 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 699 bp overlap
ChIP DE DE-GATA4-2 699 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 198 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 699 bp overlap
ChIP DE DE-GATA6-2 699 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 508 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 595 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 321 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 699 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 699 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 687 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 668 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 288 bp overlap
JMJD1C 1 dataset
ChIP HL-60 GSE63484.JMJD1C.HL-60 227 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 248 bp overlap
MAFF 1 dataset
ChIP HeLa-S3 ENCSR140DSL.MAFF.HeLa-S3 132 bp overlap
MAFK 3 datasets
ChIP Hep-G2 ENCSR000EDZ.MAFK.Hep-G2 190 bp overlap
ChIP HepG2 ENCFF743ZOF 241 bp overlap
ChIP HepG2 ENCFF767LDG 257 bp overlap
ONECUT1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 297 bp overlap
PDX1 1 dataset
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 205 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 75 bp overlap
RNF2 1 dataset
ChIP fibroblast GSE139053.RNF2.fibroblast 433 bp overlap
RUNX1 1 dataset
ChIP NB4 GSE81992.RUNX1.NB4 269 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 219 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 699 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 699 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 644 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 641 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 699 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 437 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 699 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 699 bp overlap
SMAD4 2 datasets
ChIP endoderm GSE29422.SMAD4.endoderm 199 bp overlap
ChIP endoderm GSE29422.SMAD4.endoderm 159 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 698 bp overlap
ZNF317 1 dataset
ChIP HEK293 GSE76494.ZNF317.HEK293 182 bp overlap
ZNF433 1 dataset
ChIP HEK293T GSE78099.ZNF433.HEK293T 252 bp overlap