chr15 : 24,696,121 24,697,106
985 bp 21 TFs 3 linked genes
This 985 bp open chromatin element is linked to SNRPN, SNURF, and SNHG14 and is bound by 21 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
SNRPN 258.4 kb Distal Multiome
SNURF 258.5 kb Distal Multiome
SNHG14 285.5 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr15:24,691,121 – 24,702,106
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
21 transcription factors
Source
Cell type
BRD3 1 dataset
ChIP H-1_DE GSE126661.BRD3.H-1_DE 312 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 114 bp overlap
EZH2 1 dataset
ChIP THP-1 GSE135024.EZH2.THP-1 283 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 663 bp overlap
ChIP DE DE-FOXA2-2 650 bp overlap
ChIP DE DE-FOXA2-2 256 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 874 bp overlap
ChIP DE DE-GATA4-2 985 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 985 bp overlap
ChIP DE DE-GATA6-2 985 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 373 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 608 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 476 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 476 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 519 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 580 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 289 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 666 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 391 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 304 bp overlap
KDM4C 1 dataset
ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 294 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 272 bp overlap
POU5F1 1 dataset
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 491 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 297 bp overlap
SMAD2 2 datasets
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 624 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 528 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 985 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 891 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 869 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 578 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 786 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 985 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 894 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 985 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 135 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 243 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 245 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 964 bp overlap
SOX2 1 dataset
ChIP RENVM GSE49404.SOX2.RENVM 126 bp overlap