chr13 : 55,663,996 – 55,664,478
482 bp 23 TFs 0 linked genes
This 482 bp open chromatin element has no linked target genes and is bound by 23 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:55,658,996 – 55,669,478
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
23 transcription factors
Source
Cell type
AR 1 dataset
ChIP MCF-7 ERP001226.AR.MCF-7 241 bp overlap
CTCF 2 datasets
ChIP endodermal cell ENCFF471YCZ 279 bp overlap
ChIP endodermal cell ENCFF471YCZ 78 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 146 bp overlap
ESR1 62 datasets
ChIP MCF-7 GSE95302.ESR1.MCF-7 370 bp overlap
ChIP MCF-7 GSE68355.ESR1.MCF-7 341 bp overlap
ChIP MCF-7 GSE48930.ESR1.MCF-7 258 bp overlap
ChIP MCF-7 GSE41561.ESR1.MCF-7 241 bp overlap
ChIP MCF-7 GSE45822.ESR1.MCF-7 219 bp overlap
ChIP MCF-7 GSE103023.ESR1.MCF-7 214 bp overlap
ChIP MCF-7 GSE76893.ESR1.MCF-7 176 bp overlap
ChIP MCF-7 ERP000209.ESR1.MCF-7 162 bp overlap
ChIP MCF-7L_t1 GSE108787.ESR1.MCF-7L_t1 235 bp overlap
ChIP MCF-7_ARID1A-KO GSE123284.ESR1.MCF-7_ARID1A-KO 222 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT GSE123284.ESR1.MCF-7_ARID1A-KO_4-OHT 236 bp overlap
ChIP MCF-7_AZD2014 GSE103023.ESR1.MCF-7_AZD2014 202 bp overlap
ChIP MCF-7_E2 ERP000209.ESR1.MCF-7_E2 87 bp overlap
ChIP MCF-7_E2 GSE68356.ESR1.MCF-7_E2 275 bp overlap
ChIP MCF-7_E2 GSE60270.ESR1.MCF-7_E2 240 bp overlap
ChIP MCF-7_E2 ERP000209.ESR1.MCF-7_E2 219 bp overlap
ChIP MCF-7_E2 ERP000380.ESR1.MCF-7_E2 210 bp overlap
ChIP MCF-7_E2 ERP000901.ESR1.MCF-7_E2 186 bp overlap
ChIP MCF-7_E2 GSE55921.ESR1.MCF-7_E2 180 bp overlap
ChIP MCF-7_E2 GSE14664.ESR1.MCF-7_E2 118 bp overlap
ChIP MCF-7_E2-10min-ERalpha GSE94023.ESR1.MCF-7_E2-10min-ERalpha 214 bp overlap
ChIP MCF-7_E2-20min-ERalpha GSE94023.ESR1.MCF-7_E2-20min-ERalpha 235 bp overlap
ChIP MCF-7_E2-320min-ERalpha GSE94023.ESR1.MCF-7_E2-320min-ERalpha 158 bp overlap
ChIP MCF-7_E2-40min-ERalpha GSE94023.ESR1.MCF-7_E2-40min-ERalpha 261 bp overlap
ChIP MCF-7_E2-5min-ERalpha GSE94023.ESR1.MCF-7_E2-5min-ERalpha 268 bp overlap
ChIP MCF-7_E2-80min-ERalpha GSE94023.ESR1.MCF-7_E2-80min-ERalpha 217 bp overlap
ChIP MCF-7_E2PG GSE68356.ESR1.MCF-7_E2PG 256 bp overlap
ChIP MCF-7_E2_45m GSE67295.ESR1.MCF-7_E2_45m 145 bp overlap
ChIP MCF-7_E2_45min GSE109820.ESR1.MCF-7_E2_45min 254 bp overlap
ChIP MCF-7_E2_90min GSE109820.ESR1.MCF-7_E2_90min 300 bp overlap
ChIP MCF-7_E2_TAM ERP000380.ESR1.MCF-7_E2_TAM 185 bp overlap
ChIP MCF-7_ER_t50 GSE119057.ESR1.MCF-7_ER_t50 151 bp overlap
ChIP MCF-7_ER_t80 GSE119057.ESR1.MCF-7_ER_t80 151 bp overlap
ChIP MCF-7_ER_t90 GSE119057.ESR1.MCF-7_ER_t90 151 bp overlap
ChIP MCF-7_GLYC ERP002305.ESR1.MCF-7_GLYC 213 bp overlap
ChIP MCF-7_HC11 GSE102882.ESR1.MCF-7_HC11 482 bp overlap
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 276 bp overlap
ChIP MCF-7_R5020 GSE68355.ESR1.MCF-7_R5020 271 bp overlap
ChIP MCF-7_RAD001 GSE103023.ESR1.MCF-7_RAD001 268 bp overlap
ChIP MCF-7_SHCRT_E2 ERP000380.ESR1.MCF-7_SHCRT_E2 234 bp overlap
ChIP MCF-7_SHFOXA1_E2 ERP000380.ESR1.MCF-7_SHFOXA1_E2 234 bp overlap
ChIP MCF-7_SICTR_E2 GSE40129.ESR1.MCF-7_SICTR_E2 140 bp overlap
ChIP MCF-7_SICTR_E2 GSE40129.ESR1.MCF-7_SICTR_E2 229 bp overlap
ChIP MCF-7_SIGATA_E2 GSE40129.ESR1.MCF-7_SIGATA_E2 220 bp overlap
ChIP MCF-7_TamR GSE128445.ESR1.MCF-7_TamR 239 bp overlap
ChIP MCF-7_jc5849 GSE126004.ESR1.MCF-7_jc5849 180 bp overlap
ChIP MCF-7_jc5850 GSE126004.ESR1.MCF-7_jc5850 220 bp overlap
ChIP MCF-7_jc5853 GSE126004.ESR1.MCF-7_jc5853 279 bp overlap
ChIP MCF-7_jc5856 GSE126004.ESR1.MCF-7_jc5856 177 bp overlap
ChIP MCF-7_parental GSE123284.ESR1.MCF-7_parental 245 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.ESR1.MCF-7_parental_4-hydroxytamoxifen 246 bp overlap
ChIP T-47D GSE148277.ESR1.T-47D 286 bp overlap
ChIP T-47D GSE74033.ESR1.T-47D 203 bp overlap
ChIP T-47D ENCSR000BKN.ESR1.T-47D 156 bp overlap
ChIP T-47D_45min GSE137579.ESR1.T-47D_45min 187 bp overlap
ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 187 bp overlap
ChIP T-47D_E2 GSE125594.ESR1.T-47D_E2 216 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 277 bp overlap
ChIP U2OS_100nM-E2 GSE151039.ESR1.U2OS_100nM-E2 252 bp overlap
ChIP U2OS_10nM-E2 GSE151039.ESR1.U2OS_10nM-E2 218 bp overlap
ChIP U2OS_10nM-E2-B GSE151039.ESR1.U2OS_10nM-E2-B 223 bp overlap
ChIP ZR751_E2 GSE72249.ESR1.ZR751_E2 168 bp overlap
ESR1_Y537S 3 datasets
ChIP T-47D_E2 GSE94493.ESR1_Y537S.T-47D_E2 280 bp overlap
ChIP T-47D_dox GSE94493.ESR1_Y537S.T-47D_dox 201 bp overlap
ChIP T-47D_dox_E2 GSE94493.ESR1_Y537S.T-47D_dox_E2 207 bp overlap
ESR1_pS118 1 dataset
ChIP MCF-7_E2_sc GSE117569.ESR1_pS118.MCF-7_E2_sc 302 bp overlap
FOXA1 2 datasets
ChIP MCF-7 GSE81714.FOXA1.MCF-7 184 bp overlap
ChIP MCF-7_ETOH GSE23852.FOXA1.MCF-7_ETOH 128 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 482 bp overlap
ChIP DE DE-FOXA2-2 482 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 179 bp overlap
GATA2 1 dataset
ChIP WA09 GSE105081.GATA2.WA09 216 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 482 bp overlap
ChIP DE DE-GATA4-2 482 bp overlap
ChIP foregut GSE117136.GATA4.foregut 370 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 396 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 267 bp overlap
GATA6 6 datasets
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 165 bp overlap
ChIP DE DE-GATA6-1 482 bp overlap
ChIP DE DE-GATA6-2 482 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 327 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 438 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 295 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 259 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 354 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 389 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 346 bp overlap
NANOG 3 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 88 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 463 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 292 bp overlap
NCOA2 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA2.MCF-7_E2 173 bp overlap
NCOA3 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA3.MCF-7_E2 205 bp overlap
NRIP1 2 datasets
ChIP MCF-7 ERP005838.NRIP1.MCF-7 114 bp overlap
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 207 bp overlap
PGR 1 dataset
ChIP MCF-7_R5020 GSE68355.PGR.MCF-7_R5020 203 bp overlap
SIN3A 1 dataset
ChIP H1 ENCFF042ZSL 340 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 482 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 412 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 336 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 299 bp overlap
TEAD4 1 dataset
ChIP H1 ENCFF778PAX 245 bp overlap
TFAP2A 1 dataset
ChIP WA09 GSE105081.TFAP2A.WA09 236 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 227 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 209 bp overlap
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