chr13 : 54,346,627 54,347,067
440 bp 37 TFs 0 linked genes
This 440 bp open chromatin element has no linked target genes and is bound by 37 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:54,341,627 – 54,352,067
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
37 transcription factors
Source
Cell type
ATF2 1 dataset
ChIP HepG2 ENCFF955VER 126 bp overlap
DUX4 2 datasets
Motif DE_60h DE_60h-DUX4_MA0468.1 11 bp overlap
ChIP WA01 GSE94322.DUX4.WA01 270 bp overlap
Elf5 2 datasets
Motif DE_48h DE_48h-Elf5_MA0136.4 8 bp overlap
Motif DE_60h DE_60h-Elf5_MA0136.4 8 bp overlap
FIGLA 2 datasets
Motif DE_48h DE_48h-FIGLA_MA0820.2 6 bp overlap
Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap
FOSL1::JUND 2 datasets
Motif DE_48h DE_48h-FOSL1JUND_MA1142.2 8 bp overlap
Motif DE_60h DE_60h-FOSL1JUND_MA1142.2 8 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 418 bp overlap
ChIP DE DE-FOXA2-2 440 bp overlap
GATA2 1 dataset
ChIP WA09 GSE105081.GATA2.WA09 148 bp overlap
GATA4 7 datasets
ChIP DE DE-GATA4-1 440 bp overlap
ChIP DE DE-GATA4-2 440 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 314 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 421 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 330 bp overlap
GATA5 2 datasets
Motif DE_48h DE_48h-GATA5_MA0766.3 8 bp overlap
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
GATA6 13 datasets
ChIP AGS GSE51705.GATA6.AGS 241 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 190 bp overlap
ChIP DE DE-GATA6-1 440 bp overlap
ChIP DE DE-GATA6-2 440 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 338 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 375 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 440 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 381 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 263 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 393 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 394 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 284 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 342 bp overlap
HAND2 1 dataset
Motif DE_60h DE_60h-HAND2_MA1638.2 6 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 286 bp overlap
Lef1 1 dataset
Motif DE_60h DE_60h-Lef1_MA0768.3 8 bp overlap
MGA::EVX1 2 datasets
Motif DE_48h DE_48h-MGAEVX1_MA1960.2 11 bp overlap
Motif DE_60h DE_60h-MGAEVX1_MA1960.2 11 bp overlap
NHLH2 2 datasets
Motif DE_48h DE_48h-NHLH2_MA1529.2 16 bp overlap
Motif DE_60h DE_60h-NHLH2_MA1529.2 16 bp overlap
NR4A1 1 dataset
Motif DE_60h DE_60h-NR4A1_MA1112.3 8 bp overlap
PHOX2A 1 dataset
Motif DE_60h DE_60h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 3 datasets
Motif DE_48h DE_48h-PHOX2B_MA0681.3 12 bp overlap
Motif DE_60h DE_60h-PHOX2B_MA0681.3 12 bp overlap
Motif DE_60h DE_60h-PHOX2B_MA0681.3 12 bp overlap
POU3F2 2 datasets
Motif DE_48h DE_48h-POU3F2_MA0787.1 12 bp overlap
Motif DE_60h DE_60h-POU3F2_MA0787.1 12 bp overlap
PROP1 2 datasets
Motif DE_48h DE_48h-PROP1_MA0715.1 11 bp overlap
Motif DE_60h DE_60h-PROP1_MA0715.1 11 bp overlap
Ptf1A 1 dataset
Motif DE_60h DE_60h-Ptf1A_MA1618.2 9 bp overlap
RARA 2 datasets
Motif DE_48h DE_48h-RARA_MA0729.1 18 bp overlap
Motif DE_60h DE_60h-RARA_MA0729.1 18 bp overlap
RXR 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.RXR.pancreatic-progenitor_PP1 198 bp overlap
Rarb 2 datasets
Motif DE_48h DE_48h-Rarb_MA0857.1 16 bp overlap
Motif DE_60h DE_60h-Rarb_MA0857.1 16 bp overlap
SIX2 1 dataset
Motif DE_60h DE_60h-SIX2_MA1119.2 11 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 422 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 378 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 387 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 223 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 355 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 440 bp overlap
TWIST1 1 dataset
Motif DE_60h DE_60h-TWIST1_MA1123.3 8 bp overlap
ZBTB18 1 dataset
Motif DE_60h DE_60h-ZBTB18_MA0698.2 11 bp overlap
ZEB1 2 datasets
Motif DE_48h DE_48h-ZEB1_MA0103.4 6 bp overlap
Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap
ZKSCAN3 2 datasets
Motif DE_48h DE_48h-ZKSCAN3_MA1973.2 14 bp overlap
Motif DE_60h DE_60h-ZKSCAN3_MA1973.2 14 bp overlap
ZNF35 2 datasets
Motif DE_48h DE_48h-ZNF35_MA2333.1 7 bp overlap
Motif DE_60h DE_60h-ZNF35_MA2333.1 7 bp overlap
ZNF692 2 datasets
Motif DE_48h DE_48h-ZNF692_MA1986.2 8 bp overlap
Motif DE_60h DE_60h-ZNF692_MA1986.2 8 bp overlap