chr1 : 208,381,389 208,382,078
689 bp 22 TFs 1 linked gene
This 689 bp open chromatin element is linked to PLXNA2 and is bound by 22 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
PLXNA2 137.6 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:208,376,389 – 208,387,078
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
22 transcription factors
Source
Cell type
BRD3 1 dataset
ChIP H-1_DE GSE126661.BRD3.H-1_DE 493 bp overlap
BRD4 2 datasets
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 147 bp overlap
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 145 bp overlap
CRX 1 dataset
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 214 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 272 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 254 bp overlap
ESR1 1 dataset
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 140 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 518 bp overlap
ChIP DE DE-FOXA2-2 507 bp overlap
GATA2 1 dataset
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 251 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 482 bp overlap
ChIP DE DE-GATA4-2 577 bp overlap
ChIP foregut GSE117136.GATA4.foregut 373 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 291 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 444 bp overlap
ChIP DE DE-GATA6-2 645 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 202 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 303 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 218 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 539 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 401 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 312 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 344 bp overlap
ChIP foregut GSE117136.GATA6.foregut 387 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 177 bp overlap
HIF1A 1 dataset
ChIP U2OS_trough_DMOG GSE85096.HIF1A.U2OS_trough_DMOG 371 bp overlap
NELFE 1 dataset
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 171 bp overlap
NEUROD1 1 dataset
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 184 bp overlap
POU5F1 1 dataset
ChIP BG03 GSE21614.POU5F1.BG03 128 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 598 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 339 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 400 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 345 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 282 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 689 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap
TBL1X 1 dataset
ChIP HEK293T GSE35197.TBL1X.HEK293T 64 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 164 bp overlap
ZNF263 4 datasets
ChIP HEK293 ENCFF336CWQ 591 bp overlap
ChIP HEK293T GSE78099.ZNF263.HEK293T 216 bp overlap
ChIP Hep-G2 ENCSR313MMD.ZNF263.Hep-G2 119 bp overlap
ChIP K-562 ENCSR000EWN.ZNF263.K-562 459 bp overlap