chr12 : 17,489,552 – 17,489,837
285 bp 23 TFs 0 linked genes
This 285 bp open chromatin element has no linked target genes and is bound by 23 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:17,484,552 – 17,494,837
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
23 transcription factors
Source
Cell type
CTCF 126 datasets
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 207 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 265 bp overlap
ChIP A-549 ENCSR000DPF.CTCF.A-549 222 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 268 bp overlap
ChIP A549 ENCFF034FVO 229 bp overlap
ChIP A673 ENCFF123WOM 285 bp overlap
ChIP BC-3 GSE135740.CTCF.BC-3 203 bp overlap
ChIP BJAB GSE31485.CTCF.BJAB 128 bp overlap
ChIP Caco-2 ENCSR000DQN.CTCF.Caco-2 173 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 127 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 285 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 171 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 245 bp overlap
ChIP GM12867 ENCSR000DRH.CTCF.GM12867 181 bp overlap
ChIP GM12868 ENCSR000DRI.CTCF.GM12868 103 bp overlap
ChIP GM12871 ENCSR000DRL.CTCF.GM12871 177 bp overlap
ChIP GM12872 ENCFF697BYI 244 bp overlap
ChIP GM12872 ENCSR000DRN.CTCF.GM12872 153 bp overlap
ChIP GM12875 ENCFF081UCQ 222 bp overlap
ChIP GM12875 ENCSR000DRU.CTCF.GM12875 161 bp overlap
ChIP GM23338 ENCFF531QOI 170 bp overlap
ChIP GM23338 ENCFF531QOI 213 bp overlap
ChIP GM23338 ENCFF772DML 200 bp overlap
ChIP GM23338 ENCFF832KWE 285 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF414GZI 186 bp overlap
ChIP H1 ENCFF764RHO 126 bp overlap
ChIP H9 ENCFF152GTF 244 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 277 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 280 bp overlap
ChIP HAP1_SCC4KO GSE94992.CTCF.HAP1_SCC4KO 191 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 240 bp overlap
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.CTCF.HAP1_WaplKO-33_SCC4KO 211 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 268 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 185 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 202 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 221 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 285 bp overlap
ChIP HCT-116 ENCSR000DTO.CTCF.HCT-116 211 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 184 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.CTCF.HCT-116_RAD21-mAC 157 bp overlap
ChIP HEC-1-B_R1-insertion GSE140868.CTCF.HEC-1-B_R1-insertion 87 bp overlap
ChIP HEC-1-B_RF-insertion GSE140868.CTCF.HEC-1-B_RF-insertion 152 bp overlap
ChIP HEC-1-B_RF-mutation GSE140868.CTCF.HEC-1-B_RF-mutation 160 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 285 bp overlap
ChIP HEC-1-B_a12-CBS-deletion GSE140868.CTCF.HEC-1-B_a12-CBS-deletion 131 bp overlap
ChIP HEC-1-B_ac1-CBS-deletion GSE140868.CTCF.HEC-1-B_ac1-CBS-deletion 123 bp overlap
ChIP HEK293 ENCFF498RMM 231 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 223 bp overlap
ChIP HL-60 GSE131577.CTCF.HL-60 182 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL_PDS-depleted 238 bp overlap
ChIP HeLa-S3 ENCFF255ASZ 285 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 239 bp overlap
ChIP HeLa_dC9Sun-D3AMut_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3AMut_MIR152 149 bp overlap
ChIP HeLa_dC9Sun-D3A_CDCC85C GSE107607.CTCF.HeLa_dC9Sun-D3A_CDCC85C 140 bp overlap
ChIP HeLa_dC9Sun-D3A_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3A_MIR152 118 bp overlap
ChIP Hep-G2 ERP000209.CTCF.Hep-G2 199 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 109 bp overlap
ChIP HepG2 ENCFF127KUP 185 bp overlap
ChIP Jurkat GSE68976.CTCF.Jurkat 168 bp overlap
ChIP Jurkat_DMSO GSE130140.CTCF.Jurkat_DMSO 207 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 142 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 285 bp overlap
ChIP LNCaP_Ctrl GSE125639.CTCF.LNCaP_Ctrl 165 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 269 bp overlap
ChIP MCF-10A GSE98551.CTCF.MCF-10A 273 bp overlap
ChIP MCF-10AT1 GSE98551.CTCF.MCF-10AT1 223 bp overlap
ChIP MCF-10CA1a GSE98551.CTCF.MCF-10CA1a 232 bp overlap
ChIP MCF-7 ENCFF139NQI 231 bp overlap
ChIP MCF-7 ENCFF198DQX 207 bp overlap
ChIP MCF-7 ENCFF414SZG 191 bp overlap
ChIP MCF-7 ENCFF494VXA 207 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 171 bp overlap
ChIP MCF-7 ERP000380.CTCF.MCF-7 107 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 240 bp overlap
ChIP MCF-7L_t1 GSE108787.CTCF.MCF-7L_t1 213 bp overlap
ChIP MM.1S ENCFF869JMQ 285 bp overlap
ChIP MM1-S ENCSR402IDP.CTCF.MM1-S 264 bp overlap
ChIP NB4 ENCSR000DWN.CTCF.NB4 118 bp overlap
ChIP OCI-LY1 ENCFF455ESK 285 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 285 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 246 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 180 bp overlap
ChIP PC-3 ENCFF487TUI 285 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 285 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 174 bp overlap
ChIP SEM GSE117864.CTCF.SEM 121 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 134 bp overlap
ChIP T-47D GSE111923.CTCF.T-47D 281 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 178 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 229 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 222 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 154 bp overlap
ChIP WTC11 ENCFF658QVH 279 bp overlap
ChIP endodermal cell ENCFF471YCZ 276 bp overlap
ChIP endothelial cell ENCFF663LIE 285 bp overlap
ChIP endothelial cell ENCFF663LIE 285 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 249 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 181 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 205 bp overlap
ChIP epithelial_retinal_pigment ENCSR000DVI.CTCF.epithelial_retinal_pigment 135 bp overlap
ChIP gastroesophageal-sphincter ENCSR298ZPF.CTCF.gastroesophageal-sphincter 180 bp overlap
ChIP glutamatergic neuron ENCFF816BTR 285 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 199 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 198 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 285 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 244 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 126 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 200 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 218 bp overlap
ChIP hiPSC_IID12 GSE106870.CTCF.hiPSC_IID12 164 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 214 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 204 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 198 bp overlap
ChIP leukemia GSE142161.CTCF.leukemia 257 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 236 bp overlap
ChIP leukemia_CEBPA-96h GSE142161.CTCF.leukemia_CEBPA-96h 254 bp overlap
ChIP neural crest cell ENCFF182LWK 285 bp overlap
ChIP neural progenitor cell ENCFF420RBO 181 bp overlap
ChIP neural progenitor cell ENCFF581WPG 285 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 232 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 144 bp overlap
ChIP primary-glioblastoma_G567 GSE121601.CTCF.primary-glioblastoma_G567 153 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 201 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 283 bp overlap
ChIP retinal pigment epithelial cell ENCFF810AAG 243 bp overlap
ESR1 1 dataset
ChIP MCF-7 GSE119057.ESR1.MCF-7 150 bp overlap
FOXE1 2 datasets
Motif DE_12h DE_12h-FOXE1_MA1487.3 12 bp overlap
Motif ES_0h ES_0h-FOXE1_MA1487.3 12 bp overlap
GATA3 1 dataset
ChIP Jurkat GSE76181.GATA3.Jurkat 158 bp overlap
MYB 1 dataset
Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap
NFATC3 1 dataset
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
NFATC4 1 dataset
Motif DE_12h DE_12h-NFATC4_MA1525.3 9 bp overlap
Nfatc1 1 dataset
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
PAX3-FOXO1 1 dataset
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 96 bp overlap
RAD21 2 datasets
ChIP H1 ENCFF698EWO 224 bp overlap
ChIP H1 ENCFF967OJF 206 bp overlap
REL 1 dataset
Motif DE_12h DE_12h-REL_MA0101.1 10 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 107 bp overlap
SIX1 1 dataset
Motif DE_12h DE_12h-SIX1_MA1118.2 9 bp overlap
SIX2 1 dataset
Motif DE_12h DE_12h-SIX2_MA1119.2 11 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 96 bp overlap
SMC3 1 dataset
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.SMC3.HeLa-Kyoto_WAPL_PDS-depleted 168 bp overlap
SOX12 1 dataset
Motif DE_12h DE_12h-SOX12_MA1561.2 10 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Stat6 1 dataset
Motif DE_12h DE_12h-Stat6_MA0520.2 10 bp overlap
Zfp335 2 datasets
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Motif ES_0h ES_0h-Zfp335_MA2002.2 7 bp overlap
Zic1::Zic2 2 datasets
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Motif ES_0h ES_0h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 2 datasets
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Motif ES_0h ES_0h-Zic2_MA1629.2 9 bp overlap
Zic3 2 datasets
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
Motif ES_0h ES_0h-Zic3_MA0697.3 7 bp overlap
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